Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0730 ATGGCCTCTGCCTACCGAGACCGCACCTCGGAGTTCCGATCACTTTCTGAGACTCTCAAGAAAATTGGGGTAGTCACACCTCCTAATCAATCCGAAAATGTTCCTTCTACATCGAAACAATCCACTCCCATATCCTATTCTAGATCCGAATTCAACAGGAATGCCTCCCGAATCGGATTGGGTATCCATGAAACCTCCCAGAAGATTGCAAGGCTTGCTCTATTGGCAAAGAAGTCATCAATGTTTAATGATCCCATTGTGGAAATACAAGAATTAACGGCTTTGGTTAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAACATGGAGATAGCTGACGGACATTATTCAGAGGATAGAATTGTTCATTCAACAGCTGTTTGTGATGACTTGAAGAGCAAACTTATGGGGGCAACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACTGAGAATATCAAGGCTCATGAGAATAGGAGGCAGATATTTTCCAAGAATGCATCAAGAGACAATCCTTTCCAGCATCGGCCAAAGCCAGTGACTGAGCCACCCCCCTGGTCAAATACATCAAATGCGTCTGACAACTTGCAACAAACATCACCATTACTTTCAAATGAAGCTCCAGTTGGCAATCAACTAAGACGAAGGTTAGCAGTGGACAACACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTCCCACGGCAAGAAAGTTATACTCAGACTCGGGCAACCGCTCTGCACAATGTGGAATCTACTATAACAGAACTTAGTGGGATCTTCACTCATTTGGCTACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATAAAATCAAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTGATACTTTTTCTGATGATCTTCATATTCTTCGTGGCCTAA 1020 0.4225 MASAYRDRTSEFRSLSETLKKIGVVTPPNQSENVPSTSKQSTPISYSRSEFNRNASRIGLGIHETSQKIARLALLAKKSSMFNDPIVEIQELTALVKNDITALNSALSDLQTIQNMEIADGHYSEDRIVHSTAVCDDLKSKLMGATKQLQDVLTTRTENIKAHENRRQIFSKNASRDNPFQHRPKPVTEPPPWSNTSNASDNLQQTSPLLSNEAPVGNQLRRRLAVDNTPSQQMEMSMVQQVVPRQESYTQTRATALHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQIKSNRWLLIKIFAILILFLMIFIFFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0730 339 CDD SNARE_syntaxin5 251 335 - -
Glsi08g0730 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi08g0730 339 Pfam SNARE domain 284 335 IPR000727 -
Glsi08g0730 339 Gene3D - 46 302 - -
Glsi08g0730 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Glsi08g0730 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Glsi08g0730 339 PANTHER SYNTAXIN 49 333 IPR045242 -
Glsi08g0730 339 SMART tSNARE_6 242 309 IPR000727 -
Glsi08g0730 339 MobiDBLite consensus disorder prediction 158 217 - -
Glsi08g0730 339 MobiDBLite consensus disorder prediction 192 214 - -
Glsi08g0730 339 SUPERFAMILY t-snare proteins 47 302 IPR010989 GO:0016020|GO:0016192
Glsi08g0730 339 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0730 Glsi-ChrGlsi08 5645457 5649552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0730 1 339 SNARE and Associated Proteins AT5G05760 67.059 2.61e-157 442