Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0709 ATGGAACCTCTTCATCCATCTTATTTAATGTCAAATTCAAATTGGTTAGACCAAGAGAACCACAACTCAGAATGGACTAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTGGCCATATATGATAAGGACACCCCAGACCGATGGTTGAAGGTGGCAGCCATGGTCCCTGGGAAGACTGTGTACGATGTTATGAAACAGTACAGGGAATTAGAAGAAGATGTCAGTGAAATAGAAGCAGGGAGGGTTCCCATTCCCGGATATCATACCTCTTCTTCCACGTTTGATTTAACTGACAATCAAAGTTATAATGCCTACACAAAGAGGCCTGCAACTGTCAAAGATTATCAGAGTAAGCCCGCGGTATTCAACGACTCTCCAATGCTTTCACCTCAGCACAAGTTGACTAGCATGCCACAAGTACAATGGAACGGGAATCACCACATTGATGAATACGGGTCAAGCATGGTTCTCAACCCCAATCCCAATTACGACGACTTGTTCAGGTCATCTTCGTATGTGAAACTGCAAGGGCAGGATCTCAATGACTGGGCCTTCCATGAGGCTCTTAGAGACTTCAATAAGGAACCTGTTTATATTTAA 600 0.435 MEPLHPSYLMSNSNWLDQENHNSEWTREENKKFESALAIYDKDTPDRWLKVAAMVPGKTVYDVMKQYRELEEDVSEIEAGRVPIPGYHTSSSTFDLTDNQSYNAYTKRPATVKDYQSKPAVFNDSPMLSPQHKLTSMPQVQWNGNHHIDEYGSSMVLNPNPNYDDLFRSSSYVKLQGQDLNDWAFHEALRDFNKEPVYI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0709 199 CDD SANT 24 70 IPR001005 -
Glsi08g0709 199 Gene3D - 16 84 - -
Glsi08g0709 199 SMART sant 21 73 IPR001005 -
Glsi08g0709 199 ProSiteProfiles Myb-like domain profile. 17 71 IPR001005 -
Glsi08g0709 199 FunFam Transcription factor SRM1 17 84 - -
Glsi08g0709 199 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 113 IPR043363 -
Glsi08g0709 199 SUPERFAMILY Homeodomain-like 23 77 IPR009057 -
Glsi08g0709 199 Pfam Myb-like DNA-binding domain 23 69 IPR001005 -
Glsi08g0709 199 ProSiteProfiles SANT domain profile. 20 75 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0709 Glsi-ChrGlsi08 5524891 5525979 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi08g0709 Myb_DNA-binding 2.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0709 08 5524891 5525979 Glsi08g0709 08 5524891 5525979 ECH
Glsi08g0709 08 5524891 5525979 Glsi10g1618 10 10875655 10876996 ECH
Glsi10g1618 10 10875655 10876996 Glsi08g0709 08 5524891 5525979 ECH