Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0693 ATGACTGAAGGAGACCCCACCGTCTCTGCCTCTCCCTCCCTCGACCCTCCCCACAATGGCGTCGCTGACTCGGAACTCGGCGGTGGAACTGACTTGGAACCCGTGGGTGGCGATGCTGACTTGTCGGGGCTTGGAGACGGAAACGTTGCCGGTAGAGTGAAGGGACCATGGTCCCCGGAGGAGGACGCCGTTCTTAGTCGATTGGTTTGCAAGTTTGGGGCAAGAAATTGGAGTATGATCGCGCGAGGAATACCCGGGCGCTCCGGCAAGTCCTGCCGTCTCCGGTGGTGTAATCAGCTCGACCCTTGTGTTAAACGCAAGCCCTTTACCGAGGACGAGGATCATATTATAGCTGCAGCCCATGCAATGCATGGAAATAAATGGGCAGCAATCGCAAGGCTTCTTCCAGGTAGAACAGATAATGCAATAAAAAACCATTGGAATTCTACACTCAAGCGCAGGTGTATGGATCTGGGAAGATATGTCCCAGTGGGTGCTGGTGTGATGGAAGATGGTGCCCTTGAGGCTTGTGACAAAACAAAGGCATCCTCTGAAGAAACCATGTCAGTAGGGGATATCAATTCATTGAATCCTACAGAAGTTAAAAATGTCATGATGGACTGTGGAATTATGCAGTATGAAGACAGTCCTCAAAGAAAGAATGGTGCAGATGTGGAGGAACATCCTACCCTTTGTCGCCCAGTAGCACGTGTTAGTGCGTTTAGTGTGTATAATCCTCTATGCACAACAACTGGATCTACTACATATTCAAATATGCTGCCGATGCAGGGCCCTTTAGTCCAATCATCCAAAGCAGAAGTAGGTGCCTGCAAGCTATTTGAAGATTTTGGCTGTGAGCCCATGGTTCCATTGCAATGTGGTCATGGCTGTTGTTCAGCAGGTTCAGGGGGAAGTCAGTCTCATGGTTCATTATTAGGTCCTGAGTTTGTTGACTACTTGGAGTCCCCCTCTCTGACAAGTCATGAATTGATCTCTATAGCTACAGACTTGAATAATATTTCTTGGATCAAGAGTGGCCTTGAGAACCATGGTACCAGGGTAACTGAGAATGCAGCAAACATGACAGCATCCCAAGGTGTTGCTACCGCATTACAAACAGGCTTCTTAGAACACGGTGTGAAGAGTGACGATATGTACATTGAGGAGGGACCAAGCAAGTTTGTGGGTGTGATGCAAGAAGTATTATCAACGCAGATGCCTAGTCATCCTTTTGCAATGCCGGCAGAAGTTTGA 1254 0.4856 MTEGDPTVSASPSLDPPHNGVADSELGGGTDLEPVGGDADLSGLGDGNVAGRVKGPWSPEEDAVLSRLVCKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPCVKRKPFTEDEDHIIAAAHAMHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMDLGRYVPVGAGVMEDGALEACDKTKASSEETMSVGDINSLNPTEVKNVMMDCGIMQYEDSPQRKNGADVEEHPTLCRPVARVSAFSVYNPLCTTTGSTTYSNMLPMQGPLVQSSKAEVGACKLFEDFGCEPMVPLQCGHGCCSAGSGGSQSHGSLLGPEFVDYLESPSLTSHELISIATDLNNISWIKSGLENHGTRVTENAANMTASQGVATALQTGFLEHGVKSDDMYIEEGPSKFVGVMQEVLSTQMPSHPFAMPAEV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0693 417 MobiDBLite consensus disorder prediction 1 47 - -
Glsi08g0693 417 PANTHER MYB PROTEIN-RELATED 54 210 - -
Glsi08g0693 417 FunFam MYB transcription factor 54 105 - -
Glsi08g0693 417 SUPERFAMILY Homeodomain-like 51 147 IPR009057 -
Glsi08g0693 417 CDD SANT 108 151 IPR001005 -
Glsi08g0693 417 Pfam Myb-like DNA-binding domain 106 150 IPR001005 -
Glsi08g0693 417 Pfam Myb-like DNA-binding domain 54 100 IPR001005 -
Glsi08g0693 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 100 IPR017930 -
Glsi08g0693 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Glsi08g0693 417 Gene3D - 108 154 - -
Glsi08g0693 417 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Glsi08g0693 417 Gene3D - 53 105 - -
Glsi08g0693 417 SMART sant 53 102 IPR001005 -
Glsi08g0693 417 SMART sant 105 153 IPR001005 -
Glsi08g0693 417 CDD SANT 56 98 IPR001005 -
Glsi08g0693 417 ProSiteProfiles Myb-like domain profile. 54 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0693 Glsi-ChrGlsi08 5445118 5449358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0693 49 361 MYB Transcription Factor Family AT3G55730 51.543 9.13e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0693 Myb_DNA-binding 5.3e-13 CL0123