Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0692 ATGGTGATTGCAGAGCAGTCTCATGTTGTTGATATAGACAATGGCTGTCGACGGAGCTCCGTCGGCGATGGCAGTGAAGGGTATTCAGAGACCAGCGGCAGGTCTGATGGTGAGCAAAGGTCCTCCCACGAGTCTGGTCCCGAGATTGTGGGAGGGTCTGACAAAGAAAGGGGATCTTCTGCGTCCGAGTGTGAGGTGAAGGTGGATCTGGACAAAGTGGAGCCTGACGTTAAGGTGCATTTGGCTAAGGTGAGGGATTGTAGGATTTGTCATTTGAGCATGGATATGACCAATCATGAATCTGGGACTTCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACGGTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACCTGTGAAATCTGTGGATCAATTGCAAGCAATGTAGCTGGTGGTGTTGAAGTTGAAATGACAGAACAATGGAATGAGGCAAATGATGCCTCCATGGTAGCACCAACCGGACTTGTTTTGATCCCTTCAGAAAGTAGAAACTTTTGGCAGGGACACCGGTTCTTGAATTTTCTGCTTGCTTGTATGGTGTTTGCCTTTGTCATTTCTTGGCTATTTCACTTCAATGTGCCCTCATGA 636 0.478 MVIAEQSHVVDIDNGCRRSSVGDGSEGYSETSGRSDGEQRSSHESGPEIVGGSDKERGSSASECEVKVDLDKVEPDVKVHLAKVRDCRICHLSMDMTNHESGTSIELGCSCKDDLAAAHKRCAEAWFKIKGNKTCEICGSIASNVAGGVEVEMTEQWNEANDASMVAPTGLVLIPSESRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0692 211 SUPERFAMILY RING/U-box 85 140 - -
Glsi08g0692 211 MobiDBLite consensus disorder prediction 1 61 - -
Glsi08g0692 211 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
Glsi08g0692 211 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Glsi08g0692 211 PANTHER ZINC FINGER, RING-CH-TYPE 22 210 - -
Glsi08g0692 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 146 IPR013083 -
Glsi08g0692 211 SMART ringv_2 86 139 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0692 Glsi-ChrGlsi08 5439926 5442885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0692 36 211 C3H Transcription Factor Family AT5G05830 63.736 1.89e-71 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0692 08 5439926 5442885 Glsi08g0692 08 5439926 5442885 ECH