Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0670 ATGTCTATCGGTGTGCTCCCAATGAAAGCGACGTCTAAATTCCTCCTCTTCACGGCGGCGCTGCTAACGTGCGTCGGCTATGGAGTGTCCCTCACCCGCTGCCCTAACTGTGGCAACTCCTCTGTACCCTACCCATTTAGCACAGCACCCACCTGTGGTGACCCGTCATACAAGATCCGGTGCAGCTCCGGCTCACTTATATTCGACACCCTCAACAACTCGTACCCGATCGAATCCATCAATCCGCAATTCCAACGCCTCGTGATCCGACCCGCTTCCCTCATATCTAACACCTGCGTTACGACGGATAAAATCCACGAGGGCATCCAGCTCAACAGTAGCCTCCCCTTCAATATCACCAGCGACAACACCATCGTCTATCTGAACTGTACGGCCACGCTTCTCCTATCGCCGCTGAATTGCTCGTCGGCGAGCTTGTGCCACACCTACATCAACGGCACCCGAGACGCGCGCCCATGCGAGGACACGCCCCTGTGTTGCACGTTCAGGGCGGGCGGGTCCAGCAACTCCTACATGATTCGGGTCCGGGATGTGGGTTGCAGCGCTTACTCAAGCTTCGTGAATTTGGACCCTTCTTTGCCGGTGAACCGGTGGCCGGAACCGGGGTTGGAGATTCAGTGGGTGTCACCGCAGGAACCGATCTGTGGGTCCCAAGCGGATTGCGATGGTGGGAACTCAACTTGCGGGTCCAACCCATCGAGCAACGGGATCAAGAGATGTTTCTGTAATACTGGGCTTGTGTGGGACCCTATCGAAGGGGCGTGCACTGAAAAAATTACTTGTCAAAGTCCGGAGAACTGTGGCGGCTCGACAGATCGAACAGCACTTATAGCTGGTTTAACCTGTGGGATTGGTGCAGCCCTGATCCTAGCCGCCATTGCCGTTCTACTCTACAAACGCCACAGACGTATCAAGGAAGCACGAGAACGCCTAGTGAGAGAGCGCGAGGGTATCCTCAATGCCAGTGGTGGAGGCAGAGCCGCAAAGCTTTTCTCTGGCAAAGAACTCAAAAAAGCCACAAACGATTTCTCCAGAGACCGCCTTCTTGGTGCTGGTGGTTATGGCGAAGTCTACAAAGGCGTTCTTGGTGATGGCACTGTCGTGGCTGTTAAATCTGCCAAGCTTGGAAACGCCAAAGGCACCGACCAAGTCCTCAACGAGGTTCGCATATTATGCCAAGTCAACCACCGCAACCTCGTGGGTCTTCTTGGTTGCTGCGTGGAGTTAGAGCAGCCAACACTGGTTTATGAGTTCATAGAGAATGGGACACTTCTTGATCATTTGAAAGGTCACATGCCTAAGGGGAGTGGCATGCTTACTTGGACTCATCGCCTTCGAATTGCCCACGACACAGCTGAAGGTCTTGCGTACCTTCACTTCTTGGCTGTGCCTCCTATATACCATAGAGATGTCAAGTCTAGTAACATTCTGCTAGATTTCAAACTGAATGCTAAGGTTTCGGATTTCGGCTTATCGAGGTTGGTTGAAACTGATATGAGTCATATCTCAACTTGTGCTCAAGGGACTCTTGGGTATCTGGATCCCGAGTATTACAGGAATTACCAATTGACTGATAAAAGTGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAGCTGTTGACGGCACAAAAGGCAATAGATTTTAACAGGGAACCAGATGATGTGAATTTGACAGTTTATGTGCACAGGATGGCGGAGGAAGAGAAGTTGATGGATGTCATTGATCCAATGCTGAAAAATGGAGCTACCACTGTGGAACTGGAGACTATGAAGGCAGTGGCGTTTCTGGCATTGGGATGCTTGGAGGAACGAAGGCAGAACCGACCTTCAATGAAAGAGGTGGCGGAGGAGATTGAGTATATCATTAGTATTGCTACAGCAACAAATACAGAAAACTAATCTAATCAAAGGGAAAGCAAGGGGCGTATCACGATGAAGGCACTGATTCTGGTTGGAGGATTTGGAACAAGGCTGAGGCCATTGACACTCAGTGTCCCTAAGCCTCTCGTTGATTTTGCTAACAAACCCATGATCCTGCACCAGATAGAGGCTCTTAAGGCTATTGGAGTTAGTGAAGTCGTATTAGCTATCAATTACCAACCAGAGGTGATGTTGAATTTTTTGAAGGAATTTGAGGCAAAGCTTGGCATCAAGATAACTTGTTCCCAAGAAACTGAGCCACTGGGGACTGCAGGCCCTCTGGCTCTTGCCAGGGACAAGCTGATAGATGACTCTGGAGAGCCATTTTTTGTTCTTAACAGTGATGTTATCAGTGAGTACCCACTTAAAGAAATGATTGAATTCCATAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTGGTCGTAATGGAGGAGAAAACAGGGCAGGTCGAAAAATTTGTAGAAAAGCCAAAGTTATTTGTTGGTAACAAAATCAATGCTGGAATCTACCTTTTGAACCCCTCGGTTTTGGATCAAATTAAACTGAGGCCTACTTCTATCGAGAAAGAAGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTGTATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTACTGGCTTGAGACTCTACTTAGACTCACTGAGGAAAAAGTCTTCTTCTAAGTTGGCCAGTGGCCCTCACATTGTGGGGAATGTCATTGTGCATGAGACTGCCAAAATTGGTGAGGGTTGTCTTATTGGACCTGATGTCGCAATTGGTCCTGGCTGTGTTGTTGAGTCAGGTGTTAGGCTCTCGCGCTGCACAGTGATGCGAGGAGTTCGAATTAAAAATCACACTTGCATATCCAACAGTATCATTGGTTGGCATTCCACTGTAGGGCAATGGGCACGTGTGGAAAACATGACTATTCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTTTGAAGCCGGAGATAGTCATGTGA 3039 0.486 MSIGVLPMKATSKFLLFTAALLTCVGYGVSLTRCPNCGNSSVPYPFSTAPTCGDPSYKIRCSSGSLIFDTLNNSYPIESINPQFQRLVIRPASLISNTCVTTDKIHEGIQLNSSLPFNITSDNTIVYLNCTATLLLSPLNCSSASLCHTYINGTRDARPCEDTPLCCTFRAGGSSNSYMIRVRDVGCSAYSSFVNLDPSLPVNRWPEPGLEIQWVSPQEPICGSQADCDGGNSTCGSNPSSNGIKRCFCNTGLVWDPIEGACTEKITCQSPENCGGSTDRTALIAGLTCGIGAALILAAIAVLLYKRHRRIKEARERLVREREGILNASGGGRAAKLFSGKELKKATNDFSRDRLLGAGGYGEVYKGVLGDGTVVAVKSAKLGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPTLVYEFIENGTLLDHLKGHMPKGSGMLTWTHRLRIAHDTAEGLAYLHFLAVPPIYHRDVKSSNILLDFKLNAKVSDFGLSRLVETDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNREPDDVNLTVYVHRMAEEEKLMDVIDPMLKNGATTVELETMKAVAFLALGCLEERRQNRPSMKEVAEEIEYIISIATATNTENXSNQRESKGRITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEKTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDQIKLRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSSKLASGPHIVGNVIVHETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKNHTCISNSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0670 1012 SUPERFAMILY Protein kinase-like (PK-like) 335 625 IPR011009 -
Glsi08g0670 1012 FunFam mannose-1-phosphate guanyltransferase beta 652 883 - -
Glsi08g0670 1012 Pfam Protein tyrosine and serine/threonine kinase 353 624 IPR001245 GO:0004672|GO:0006468
Glsi08g0670 1012 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 652 1011 - -
Glsi08g0670 1012 ProSiteProfiles Protein kinase domain profile. 350 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0670 1012 Pfam Wall-associated receptor kinase galacturonan-binding 34 87 IPR025287 GO:0030247
Glsi08g0670 1012 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 653 883 IPR029044 -
Glsi08g0670 1012 SMART serkin_6 350 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0670 1012 FunFam Wall-associated receptor kinase-like 20 312 425 - -
Glsi08g0670 1012 Gene3D Transferase(Phosphotransferase) domain 1 426 652 - -
Glsi08g0670 1012 Pfam Nucleotidyl transferase 653 880 IPR005835 GO:0009058
Glsi08g0670 1012 SUPERFAMILY Nucleotide-diphospho-sugar transferases 652 963 IPR029044 -
Glsi08g0670 1012 Pfam Bacterial transferase hexapeptide (six repeats) 912 946 IPR001451 -
Glsi08g0670 1012 Gene3D Hexapeptide repeat proteins 887 1007 - -
Glsi08g0670 1012 Gene3D Phosphorylase Kinase; domain 1 315 425 - -
Glsi08g0670 1012 CDD STKc_IRAK 356 626 - -
Glsi08g0670 1012 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Glsi08g0670 1012 FunFam Wall-associated receptor kinase-like 20 426 638 - -
Glsi08g0670 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Glsi08g0670 1012 CDD M1P_guanylylT_B_like_N 652 885 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0670 Glsi-ChrGlsi08 5274438 5283426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0670 33 638 Receptor kinase-like Gene Family AT5G02070 53.710 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi08g0670 PK_Tyr_Ser-Thr 4.1e-44 CL0016