Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0662 ATGGAGGAATCTCATTCTCAGTATTTGACGTGGACGAAGAGAAAACAAATCTTGAAGTCACATCTTCAAGCGCCAGTTAGAGTCTGCAACAACTCATGGGAAGAAAGGGCTTTTGCAGAAGATGCGGCTAGGACACTTGGTGGGTGCATATGGTGGCCTCAAAGATCTTACTCTTGTAGTTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGAGGTCACATGAACGTCCACAGGAGGGACAGAGCTAGGCTAAAACAAAATCTTAGTCCCCACAATAATGATTGTAAGTCATTAGGTGCTCAATTTTCGGCAGATATCTGCTCCCAACTAGATTCTCCCACCACAAGCAGACTTTCACCTTCTAGGCTCTCAGCTTTATCCACACTAGAAAATTGTGGTCGGCAAACCATTTTTCCTTGTCCCGCTTCGTCTATTAGCTGGGGGCCGCAGAAGGGTTGTCCTAATTCAGAACCAGAAGGGGAAATCAACGTTAGGGAAGAAGATTTTAGAGGCCTGAGTTGTAATCATGTTGAAACAGAGTTGTCTGTGGGATTGAATCCAATGCTCCTGGCTTTCCCCTCTGCAGAAATCGTACTTGAACTTAGGCCTGAAACAATGGCTGTATATGGCTTTGTAATCATCAACCAGTTCTATCTTATCATGTTTCTGTTTTCGACTCCGGTTGACATTAGCAAATTCGATGGACCCAGACAGGAATCAGAGATCGATAAAGGGAGGAGGAAAATTCACTGGAAACTTGATGAAACAAGGCTTTTGACTTATTGTTCTTTGCTGTTTGCAGAGAGATACAAAAGGAATGGCTGAATTCGGATGCGAGGATGTGCTGCATACGTAGCAAGTTTCCCTTTTTTAGGGCGTTTTGATATTTGCAGGAGGAAGAGCAATCCCGGCTACTCCGACCAAAAAATAAGTAAACCCAGCTTGAGAGATCCTAAAAAACGAAACTATAACACTTTAATGGCGAAGCCGGAGAGTAGCAAAAGAGGTTCAAGATGGTCGCTCGAGGGAATGACCGCTCTTGTCACTGGTGGCACTCGTGGGATCGGGCATGCTGTGGTAGAGGAACTAGCCGAGTTTGGTGCGACTGTGTACACCTGTTCTAGGAATGAAGCGGAGCTCAATAAATGCTTAAAGGAGTGGCAAGATAAGGGCTTTATGGTTTGTGGGTCGGTTTGTGATGTTTCTTCTCGACCCCAAAGAGAGAAGCTTATTGAAGAAGTGGCTTCTAAATTCAACGGCAAGCTGAACATACTTGTAAACAATGTTGGAACAAATGTGAGGAAGCCAACAATTGAGTTTACTGCCGAAGATTATATGAAGTTGATGAATACTAACTTAGACTCTGCATACCATCTATGCCAACTTACGTATTCCCTTCTCAAAGCCTCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTTGCAGGTCTGTTACATATAGGTACTGGAACTGTTTATGGAGCAACTAAAGCTGCAATCAATCAGCTTACAAAAAATCTTGCTTGTGAATGGGCAAAAGACAATATAAGGAGCAACTGTGTAACACCCTGGTATACAAAAACTTCACTTGTTGAACATTTGCTTGAAGACAAAGAGTTTGTCAATCAGGTAATTTCTCGAACGCCTATCCAGCGAATAGCAGAAGCACATGAAGTCTCATCCTTGGTGGCTTTTCTTTGCCTACCTGCTGCCTCCTATATCACTGGGCAGGTTGTTTCTGTTGATGGAGGATTCACCGTGAATGGATTTCAAATCAACTTGAAATCTAACTGA 1800 0.4333 MEESHSQYLTWTKRKQILKSHLQAPVRVCNNSWEERAFAEDAARTLGGCIWWPQRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQNLSPHNNDCKSLGAQFSADICSQLDSPTTSRLSPSRLSALSTLENCGRQTIFPCPASSISWGPQKGCPNSEPEGEINVREEDFRGLSCNHVETELSVGLNPMLLAFPSAEIVLELRPETMAVYGFVIINQFYLIMFLFSTPVDISKFDGPRQESEIDKGRRKIHWKLDETRLLTYCSLLFAERYKRNGXIRMRGCAAYVASFPFLGRFDICRRKSNPGYSDQKISKPSLRDPKKRNYNTLMAKPESSKRGSRWSLEGMTALVTGGTRGIGHAVVEELAEFGATVYTCSRNEAELNKCLKEWQDKGFMVCGSVCDVSSRPQREKLIEEVASKFNGKLNILVNNVGTNVRKPTIEFTAEDYMKLMNTNLDSAYHLCQLTYSLLKASGNGSIVFISSVAGLLHIGTGTVYGATKAAINQLTKNLACEWAKDNIRSNCVTPWYTKTSLVEHLLEDKEFVNQVISRTPIQRIAEAHEVSSLVAFLCLPAASYITGQVVSVDGGFTVNGFQINLKSN 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0662 599 FunFam Short-chain dehydrogenase reductase 330 593 - -
Glsi08g0662 599 Gene3D Classic Zinc Finger 53 108 - -
Glsi08g0662 599 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 482 510 IPR020904 GO:0016491
Glsi08g0662 599 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 422 433 IPR002347 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 469 485 IPR002347 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 495 514 IPR002347 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 347 364 IPR002347 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 516 533 IPR002347 -
Glsi08g0662 599 PRINTS Glucose/ribitol dehydrogenase family signature 551 571 IPR002347 -
Glsi08g0662 599 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Glsi08g0662 599 Pfam Enoyl-(Acyl carrier protein) reductase 354 588 - -
Glsi08g0662 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 344 590 IPR036291 -
Glsi08g0662 599 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Glsi08g0662 599 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 422 433 IPR002347 -
Glsi08g0662 599 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 495 514 IPR002347 -
Glsi08g0662 599 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 475 483 IPR002347 -
Glsi08g0662 599 PANTHER TROPINONE REDUCTASE 340 591 IPR045000 GO:0016491
Glsi08g0662 599 Gene3D - 336 591 - -
Glsi08g0662 599 SMART c2h2final6 57 79 IPR013087 -
Glsi08g0662 599 Pfam C2H2-type zinc finger 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0662 Glsi-ChrGlsi08 5226278 5235508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0662 340 592 Miscellaneous Gene Families AT2G29290 64.427 5.25e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g0662 adh_short_C2 2.2e-58 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0662 08 5226278 5235508 Glsi08g0662 08 5226278 5235508 ECH
Glsi06g1802 06 65057039 65065561 Glsi08g0662 08 5226278 5235508 ECH