Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g0655 | ATGCACTATATAGATCTGAATCTAGCGAACAAGGAACTGAGAGTTCAGCACAGCATCCACAGAAAGGAAGTGCAAATAAAGAGGTTTTGTTTCGTTCCTAGATTTCTCATTATCGTAAACTTTTCAAACATGGCGAATCGGTGGTGGGCTGGAAATATGGCATTGAGACCTACGGACCCCATGTCTTCTCCATCACTTCAGCTCAGGAACCCAGAAGACGACCATGGTGGACTGAATCGACTCGGGCCTAGACGAGAGCAAGAATTCATGGACAACAGCAATAACAACACCAACGCCACCCCAACTAATAGCAGCAATAGCAACACTAACGCAAACGCCAATAACACTTCACAGGGACAGAACGCTGAAGATGATGAGAGCCGTGACACCGGGCGTGAAGCCGATGATCAAAACCCAGGTAGCCACGAAACGGTCGAGCCTGGTAGCAGCGGCCGCCGGCCCCGAGGCCGCCCACCCGGGTCGAAGAACAAGCCAAAACCCCCCATCGTTATAACCAAGGAGACCCCCAACGCACTTCGAAGCCATGTCTTGGAAATCAGTAGCGGCAGTGATGTCGCCGATAGCATTGCCACCTTCGCAAATCGTAGGCATCGTGGGGTATCGGTGCTTAGTGGAAGTGGCATTGTAACCAATGTCACCCTTCGGCAACCGGCTGCGCCTGCTGGGGTTATCACACTTAATGGAAGGTTTGAGATATTGTCTCTATCAGGTGCATTCTTGCCGGCCCCTTCGCCACCTGGGGCCACTGGGCTCACGGTGTATTTAGCGGGTGGACAGGGTCAGGTTGTTGGGGGCACGGTGGTGGGTTCTCTGGTGGCATCAGGGCCTGTTATGGTGATTGCAGCTACATTTGCTAATGCTACTTACGAGAGGTTGCCACTAGAGGATGAGCCAGCTGGGGAGGAAATGCAAGTGCAGCAACAATCAGGAGTGAATTCTGGAACTACTGGAACTTCGGCATCTCAAGGTTTGGGTGAACAAGTTTCAATGCCCATGTACAATTTACCTCCAAATTTGCTTTCGAATGGTCAAATGCCCCACGATGTATTTTGGGGTCCTCCACCTCGCCCTCCCCCTTCTTACTGA | 1107 | 0.5167 | MHYIDLNLANKELRVQHSIHRKEVQIKRFCFVPRFLIIVNFSNMANRWWAGNMALRPTDPMSSPSLQLRNPEDDHGGLNRLGPRREQEFMDNSNNNTNATPTNSSNSNTNANANNTSQGQNAEDDESRDTGREADDQNPGSHETVEPGSSGRRPRGRPPGSKNKPKPPIVITKETPNALRSHVLEISSGSDVADSIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLEDEPAGEEMQVQQQSGVNSGTTGTSASQGLGEQVSMPMYNLPPNLLSNGQMPHDVFWGPPPRPPPSY | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 304 | 331 | - | - | |
| Glsi08g0655 | 368 | FunFam | AT-hook motif nuclear-localized protein | 179 | 306 | - | - | |
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 88 | 121 | - | - | |
| Glsi08g0655 | 368 | ProSiteProfiles | PPC domain profile profile. | 176 | 314 | IPR005175 | - | |
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 60 | 171 | - | - | |
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 309 | 331 | - | - | |
| Glsi08g0655 | 368 | CDD | DUF296 | 180 | 263 | IPR005175 | - | |
| Glsi08g0655 | 368 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 177 | 304 | - | - | |
| Glsi08g0655 | 368 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 108 | 359 | IPR014476 | GO:0003680 | |
| Glsi08g0655 | 368 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 180 | 292 | IPR005175 | - | |
| Glsi08g0655 | 368 | Gene3D | - | 179 | 318 | - | - | |
| Glsi08g0655 | 368 | MobiDBLite | consensus disorder prediction | 122 | 140 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi08g0655 | Glsi-ChrGlsi08 | 5180908 | 5182203 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g0655 | 44 | 368 | AT-hook Motif Nuclear Localized (AHL) Family | AT3G55560 | 53.731 | 4.05e-76 | 236 |