Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0653 ATGACAGGGTGTGGCTCTTGTGGAGCATGCAAGTTCCTGAGGAGAAAGTGCAGTGTTGATTGTGTATTTGCTCCTTACTTCTCCTATGACCAAGCTTCTTCCTATTTTGCAGCAGTGCACAAGGTTTTTGGGGCTAGCAATGCGTCCAGGCTATTGTCACACCTACCATTGCATAACAGAAGTGTTGCTGCCAGCACCATATCTTACGAAGCATTGGCTCGGGTTCATGATCCAATATATGGTTGTGTAGCTCATATACTTGCACTGCAGCAAGAGGTCGCTAGCCTGCAAGAGGAGATAGATTTTTTCAATCTAGTGGCGAATTCTACAGCTGGTGTTGCTGGTTGTGGCAGTTCTCAAGCACTAACAAACTCAAATAATGGCATAGAGTTCTCTTTACCAAACTATCAAAATCAATTGGCTAATCAACTTCCTCACGAAGGAAGTGGCAAAGTCTACCAAAGCTTGGACGGACACAGACAGATGGATTTAGACTTCACTAATAATGTGCATGGATTGGAAGACCATTTATTTGGTGAGTCCAACCCAAACCCCTTGGACAAGCTCTTATATGGAATAGACCAAGAGGCCTTTCTGAATCATCCATGGCTCAATCATACATAA 624 0.4375 MTGCGSCGACKFLRRKCSVDCVFAPYFSYDQASSYFAAVHKVFGASNASRLLSHLPLHNRSVAASTISYEALARVHDPIYGCVAHILALQQEVASLQEEIDFFNLVANSTAGVAGCGSSQALTNSNNGIEFSLPNYQNQLANQLPHEGSGKVYQSLDGHRQMDLDFTNNVHGLEDHLFGESNPNPLDKLLYGIDQEAFLNHPWLNHT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0653 207 Coils Coil 86 106 - -
Glsi08g0653 207 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 124 - -
Glsi08g0653 207 Pfam Lateral organ boundaries (LOB) domain 6 101 IPR004883 -
Glsi08g0653 207 ProSiteProfiles LOB domain profile. 5 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0653 Glsi-ChrGlsi08 5169166 5169866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0653 5 176 AS2 family AT5G06080 50.581 1.09e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi08g0653 LOB 8.1e-34 No_clan