Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0645 ATGTCTTCGGGGAGTTCCTCTTATTGGTGCTACCGATGCAGTCGATTTGTCCGGGTATTGAGTCAGGACATGGTGGTTTGTCCGGATTGTGACAGTGGGTTTGTGGAAGAGATCGAACATCCGCCTCCGTCTGTCCACGTGGATGCCCGGCGGAGTAGGTTTCCCGCTGCAGCGATGTACATGATCGGCCACGGTCCCGGCTCTGATCAGAATTCGCGGCCTGCGCTTCGGAGGACCCGCAGGAACGGTGGTGATCGTTCGCCTTTCAATCCGGTCATCGTGCTCCGCGGATCGTCGGATGGGTCGAGCCACGAGGGAGGAGAGAGTCGTGGGTTTGAGCTTTATTACGATGATGGTGCTGGTTCTGGGCTTCGGCCTTTGCCTCCGAGCATGTCGGAGTTTCTTTTGGGATCCGGATTCGATAGGCTTTTGGAACAGCTTTCTCAGATTGAAATCAACGGTATTGGGCGATGCGAGCACCCGCCAGCATCAAAAGCTGCGATTGAATCATTGCCCACGATTGAGATTGATCAGAGTCATTTGGCCACGGAATCACATTGTGCTGTTTGCAAGGAGCCTTTTGAATTGGGCACTACGGCTAGGGAAATGCCTTGCAAGCATATATACCATCCGGAATGTATTCTACCATGGCTCGCGCTTCGCAATTCTTGCCCCGTTTGTCGCCATGAATTGCCAGCTGATAATATTAATATCCAGAACACTGCTGCAACAGGGCAATCCCTTGCCTGGAATGACGAAGAGAATGTAGGATTGACAATTTGGAGACTCCCAGGAGGTGGGTTTGCAGTGGGCAGGTTTTCTGGTGGAAGAAGAGGTGGCGAGAGGGAGTTTCCCGTTGTTTACACAGAAATGGATGGTGGGTTTAACCACGGAGGTGAGCCAAGGAGGATTTCCTGGTCTTCTAGAGGGAGCAGAGGGAGGGAGCCTGGTGGATTACGCAGAATATTCCGCAATTTGTTTTCTTGCTTTGGAGGAGTTCGATTTCAGTCCTCTCATACTAGAGAACCTCGACCTATAAGGAGTATATCTCATTTGAATATGAATACTTCTCCACGTAGTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTAA 1128 0.5098 MSSGSSSYWCYRCSRFVRVLSQDMVVCPDCDSGFVEEIEHPPPSVHVDARRSRFPAAAMYMIGHGPGSDQNSRPALRRTRRNGGDRSPFNPVIVLRGSSDGSSHEGGESRGFELYYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRCEHPPASKAAIESLPTIEIDQSHLATESHCAVCKEPFELGTTAREMPCKHIYHPECILPWLALRNSCPVCRHELPADNINIQNTAATGQSLAWNDEENVGLTIWRLPGGGFAVGRFSGGRRGGEREFPVVYTEMDGGFNHGGEPRRISWSSRGSRGREPGGLRRIFRNLFSCFGGVRFQSSHTREPRPIRSISHLNMNTSPRSRRTWSMDVNSGMRSW 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0645 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Glsi08g0645 375 CDD RING-H2_RNF126-like 187 228 - -
Glsi08g0645 375 MobiDBLite consensus disorder prediction 63 109 - -
Glsi08g0645 375 Pfam Protein of unknown function (DUF1117) 256 342 IPR010543 -
Glsi08g0645 375 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Glsi08g0645 375 MobiDBLite consensus disorder prediction 352 375 - -
Glsi08g0645 375 SMART ring_2 187 227 IPR001841 -
Glsi08g0645 375 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Glsi08g0645 375 Pfam Ring finger domain 186 228 IPR001841 -
Glsi08g0645 375 SUPERFAMILY RING/U-box 167 234 - -
Glsi08g0645 375 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Glsi08g0645 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0645 Glsi-ChrGlsi08 5127940 5129067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0645 126 239 C3H Transcription Factor Family AT5G01980 41.228 2.89e-25 105