Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0640 ATGAGTTTTGTTTTTCGAGGAACAAGAACAGATATAGAAAGTGGATTTTCAGGATTTAGACCTGAGAGGCGTATACAGCATGTTCTTGCAGAGCGTCGCCGTAGTTCCAGTTCACTCACATTTCTTGTCACAGTTCTTCTGCTATTTATGATACTAAATTCTCATCAGATGTCGCCAAATTTTTTGCTCTGGCTAGTGCTTGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAACACAGGCCCAAGCTCACGCTGCAGCAGCAGCCAGTGGCCTTTTTGGCCACACTGAACTGCGGTTGCATATGCCACCATCAATTGCACTCGCAACTCGAGGACGTCTGCAAGGCCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACCTTAAGAGCTCTGGATTCAGATAATGTTCCTACTACACTTTCCATGACTGAGGAAGAAATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTTCGCAAAACGGTGGTTCCTCAATGCAACAGGCCTCATCTTCCACATCTTCTGAGAAGAAGCAAGATACCACAAATGCAGTTGGGAGCTTGAAAGCCACTGATGATGAGCTGACTTGCAGTGTTTGTTTGGAGCAAGTAAATGTCGGAGATCTACTCCGCAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGCATTGATCCCTGGCTGCGGCAACAAGGAACATGTCCTGTCTGTAAATTTAGAGCTGGATCTGGGTGGCAAGAAAGTGGAGCCAATGAAGTGGATGCTTCAGACATGGTCTGA 831 0.4525 MSFVFRGTRTDIESGFSGFRPERRIQHVLAERRRSSSSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQTQAQAHAAAAASGLFGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTLSMTEEEINALPVHKYKVSGSQNGGSSMQQASSSTSSEKKQDTTNAVGSLKATDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWQESGANEVDASDMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0640 276 CDD RING-H2_PA-TM-RING 213 255 - -
Glsi08g0640 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 260 IPR013083 -
Glsi08g0640 276 SUPERFAMILY RING/U-box 208 258 - -
Glsi08g0640 276 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Glsi08g0640 276 PANTHER TARGET OF ERK KINASE MPK-1 1 262 - -
Glsi08g0640 276 MobiDBLite consensus disorder prediction 174 201 - -
Glsi08g0640 276 Pfam Ring finger domain 213 255 IPR001841 -
Glsi08g0640 276 SMART ring_2 214 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0640 Glsi-ChrGlsi08 5109789 5112762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0640 1 276 C3H Transcription Factor Family AT3G55530 77.978 2.34e-143 402