Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0632 ATGCGCAAAGCGAAGCATGTGATCACTTGGGGATCCAGCATGTCTGTGTTTACTCCGCCAGCTAACACAGAGAGGGTGTGATTGTTGAATGGGTATGGTTCACCATCCACACTCGTATCAGATACTGATTGGGCTTCATTACCTTTGCCCACGTCTTATCCTAAAACACTATTCTTAACTTCTAAGAGTGATTATAAAATCTTCACTCTCATCCTTAGCCATTTTCGTTCTCTTCAGCACTTAGCATTGAAAGCAATGGCTGTGATCAGCATCGTCGGCATTGTTTCCTTCCTGTCTTTTCTGACTGCCACCGACGCCAGAATACTCGGTGTCTACTCAGGCGGACCATGGCAGAGTGCTCATGCTACTTTCTACGGTGGAAGCGACGCCTCTGGAACTATGGGAGGGGCGTGTGGCTATGGAAACTTATACAGCCAAGGGTACGGCGTGAACACTGCAGCACTGAGCACTGCTCTATTCAACAACGGGTTCAGCTGCGGAGCTTGCTTCGAGATTAAGTGCGCAAATGATCCACAATGGTGCCATGCCGGTAGCCCTTCCATCTTCGTCACGGCCACCAACTTTTGCCCGCCCAACTACGCTCTCCCCAGCGACAATGGCGGTTGGTGCAACCCTCCCAGGCCTCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATCGTTCCCGTCTCTTACCGCCGGGTGCCTTGCAGGAAACACGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTACTGATCACGAACGTGGCTGGTGCAGGGGATTTAGTGAGGGTGAGCGTGAAAGGATCGAGGAGTGGGTGGATGAGCATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTCTGGTTGGTCAATCACTGTCGTTCAGGGTGACAGGCAGTGACCGGCGCACCTCCACCTCCTGGAACATTGTCCCTTCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAACTTCAGGGTCTAA 1032 0.5252 MRKAKHVITWGSSMSVFTPPANTERVXLLNGYGSPSTLVSDTDWASLPLPTSYPKTLFLTSKSDYKIFTLILSHFRSLQHLALKAMAVISIVGIVSFLSFLTATDARILGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKHGGMRFTINGFRYFNLVLITNVAGAGDLVRVSVKGSRSGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 156 174 IPR007118 GO:0005576
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 232 248 IPR007118 GO:0005576
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 116 131 IPR007118 GO:0005576
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 134 152 IPR007118 GO:0005576
Glsi08g0632 343 PRINTS Expansin/Lol pI family signature 324 338 IPR007118 GO:0005576
Glsi08g0632 343 SMART dpbb_1 152 239 IPR007112 -
Glsi08g0632 343 SUPERFAMILY Barwin-like endoglucanases 116 267 IPR036908 -
Glsi08g0632 343 Pfam Expansin C-terminal domain 250 327 IPR007117 -
Glsi08g0632 343 Gene3D - 250 341 IPR036749 -
Glsi08g0632 343 PRINTS Expansin signature 147 161 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 188 198 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 248 260 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 295 316 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 174 185 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 207 224 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 260 281 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 324 340 IPR002963 GO:0009664
Glsi08g0632 343 PRINTS Expansin signature 224 237 IPR002963 GO:0009664
Glsi08g0632 343 SUPERFAMILY PHL pollen allergen 246 338 IPR036749 -
Glsi08g0632 343 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 135 249 IPR007112 -
Glsi08g0632 343 FunFam Expansin 106 245 - -
Glsi08g0632 343 PANTHER EXPANSIN-A15 97 341 IPR002963 GO:0009664
Glsi08g0632 343 Pfam Lytic transglycolase 152 239 IPR009009 -
Glsi08g0632 343 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 259 338 IPR007117 -
Glsi08g0632 343 FunFam Expansin 249 341 - -
Glsi08g0632 343 CDD DPBB_EXPA_N 116 244 - -
Glsi08g0632 343 Gene3D - 105 245 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0632 Glsi-ChrGlsi08 5049705 5055253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0632 86 343 Expansin Gene Family AT2G39700 84.884 5.09e-166 461