LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g0625	ATGGGTTGCTGCTTCAGTGCGAGGATCAAAGCAGAGAGCCCTCCACGGAATGCTTTGAATTCAAACTATGGTAGCATAAAAGAGGAAGGTTTGAGGAGTTTAAGTGGCAAGGTCTCTGCTCCCTCTGCGCCTCCAACTCCTCGGTCAGAGGGTGAGATCTTGAATTCCTCCAATATGAAGAGCTTCAGCTTTAGTGAGCTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGCGGGTTTGGTTGTGTATTTAAGGGGTGGATTGATGAGCAGACATTTGCCCCAGTGAAACCAGGGACTGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGCAACCAGGGACACAGTGAATGGTTGACAGAAATAAACTACCTGGGGCAGCTGCATCATCCTAATCTAGTGAAACTGATAGGTTACTGCTTAGAGGATGACCATCGGATTTTGGTATATGAGTTTTTGGCCAAGGGCAGTTTGGATAATCATTTGTTTAGGAGGGCTTCTTACTTTCAACCACTTTCTTGGAGCATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTCGCATTTCTTCACAGTGACGAAGTGAAAGTGATATATAGAGACTTCAAAACTTCTAATATATTGCTTGATTCAAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAGGATGGGCCAGCAGGCGACAGGAGCCATGTCTCTACAAGAGTAATGGGCACGTATGGCTATGCTGCTCCTGAGTATATGGCCACAGGCCACTTGACCAAAAGGAGTGATGTATACAGTTTTGGGGTTGTTCTTCTCGAAATTATATCAGGCAAACGCGCATTGGATAATAACAGGCCATCCGGGGAGCATAACTTAGTTGAATGGGCCAAACCTCTCCTCACCAGCAAACGGCGAATCATCCAGGTTATGGATGCCCGTATTGAAGGCCAGTATTCACTGCGTGAAGCAATGAAAGTAGCCAACCTGGCAACTCAATGCCTGTCAGTAGAAACCAAATTAAGACCAACCATGGACGAGATGGTTGCGGCATTGGAACAACTTCAATATTCTAATGACACAGCTGAAGCGGTGGGGAGCTCACGAGATCAAAATGTCAAAAGAGATAGTCATAGATCTAGCAGCAGTGGTCCTAAGCAACGTAGAAGAAGCATCAATGGATCTTTAAATGGAGAAGGTACTTCTAATCCAAGACCATCTGCTTCTCCTCTTCGCGCGTAA	1254	0.4561	MGCCFSARIKAESPPRNALNSNYGSIKEEGLRSLSGKVSAPSAPPTPRSEGEILNSSNMKSFSFSELRTATRNFRPDSVVGEGGFGCVFKGWIDEQTFAPVKPGTGMVIAVKRLNQEGNQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDHRILVYEFLAKGSLDNHLFRRASYFQPLSWSIRMKVALDAAKGLAFLHSDEVKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDRSHVSTRVMGTYGYAAPEYMATGHLTKRSDVYSFGVVLLEIISGKRALDNNRPSGEHNLVEWAKPLLTSKRRIIQVMDARIEGQYSLREAMKVANLATQCLSVETKLRPTMDEMVAALEQLQYSNDTAEAVGSSRDQNVKRDSHRSSSSGPKQRRRSINGSLNGEGTSNPRPSASPLRA	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g0625	417	MobiDBLite	consensus disorder prediction	34	55	-	-
	Glsi08g0625	417	FunFam	Serine/threonine-protein kinase BIK1	41	159	-	-
	Glsi08g0625	417	FunFam	Probable serine/threonine-protein kinase PBL8	160	376	-	-
	Glsi08g0625	417	ProSiteProfiles	Protein kinase domain profile.	74	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g0625	417	MobiDBLite	consensus disorder prediction	373	387	-	-
	Glsi08g0625	417	CDD	STKc_IRAK	80	359	-	-
	Glsi08g0625	417	SUPERFAMILY	Protein kinase-like (PK-like)	51	360	IPR011009	-
	Glsi08g0625	417	ProSitePatterns	Protein kinases ATP-binding region signature.	80	112	IPR017441	GO:0005524
	Glsi08g0625	417	Gene3D	Phosphorylase Kinase; domain 1	49	159	-	-
	Glsi08g0625	417	Gene3D	Transferase(Phosphotransferase) domain 1	160	384	-	-
	Glsi08g0625	417	MobiDBLite	consensus disorder prediction	365	417	-	-
	Glsi08g0625	417	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Glsi08g0625	417	Pfam	Protein tyrosine and serine/threonine kinase	78	356	IPR001245	GO:0004672\|GO:0006468
	Glsi08g0625	417	MobiDBLite	consensus disorder prediction	390	417	-	-
	Glsi08g0625	417	PANTHER	OS01G0588500 PROTEIN-RELATED	46	360	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g0625	Glsi-ChrGlsi08	5006116	5009205	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g0625	1	396	Glycoside Hydrolase	AT3G07070	42.195	1.60e-106	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi08g0625		PK_Tyr_Ser-Thr	2.8e-46	CL0016