Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0622 ATGAGAAAACCTTGTTGTGACAAAGAAGGCACTAACAAAGGAGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGATTACATCCGAACTCACGGTGAAGGCTGTTGGCGTTCCCTTCCCCAGGCTGCAGGTCTGCATCGTTGTGGCAAAAGTTGCAGGCTGAGATGGACAAACTATTTAAGACCGGACATCAAACGTGGAAACTTTGCCCAAGACGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTGATAGCTGGAAGGTTGCCGGGGCGGACAGACAATGAGGTTAAGAACTATTGGAATTCTCACATTCGCAGGAAACTAATAACGATGGGGATTGATCCAAATAACCATAAGCCACATCAAAGCTTTCCTCGTCCTCGTCCTCGTCCTGATCATCACCCTATTTCTGCGGCTGAATCATCATCTGGGTCCATAAATAAACACCATAAAGTGCCCCGGGTCATCAAATCTTGTGGTGCTAATAATAACGATAGGATTTCGGACACAGAGAGCTGTCTTGAAGAAGAAACTGCGGCCACGGGTTCATCCGACTTGAATCTTGACCTAACCATTGCTTCCCCTTCTCCTACACTTGTTCTGGTACAACACAAACCTAAGCCAAATTCTGAGTCCACTGAAATAAGGGACGTTGAGAGTGAATCAGCTGCAACCCTAAGTCTATTTAGATAA 714 0.4636 MRKPCCDKEGTNKGAWSKQEDQKLIDYIRTHGEGCWRSLPQAAGLHRCGKSCRLRWTNYLRPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLITMGIDPNNHKPHQSFPRPRPRPDHHPISAAESSSGSINKHHKVPRVIKSCGANNNDRISDTESCLEEETAATGSSDLNLDLTIASPSPTLVLVQHKPKPNSESTEIRDVESESAATLSLFR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0622 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Glsi08g0622 237 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Glsi08g0622 237 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Glsi08g0622 237 MobiDBLite consensus disorder prediction 209 237 - -
Glsi08g0622 237 CDD SANT 68 111 IPR001005 -
Glsi08g0622 237 Gene3D - 67 135 - -
Glsi08g0622 237 Gene3D - 13 65 - -
Glsi08g0622 237 MobiDBLite consensus disorder prediction 118 157 - -
Glsi08g0622 237 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Glsi08g0622 237 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Glsi08g0622 237 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Glsi08g0622 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Glsi08g0622 237 CDD SANT 15 60 IPR001005 -
Glsi08g0622 237 FunFam MYB-related transcription factor 12 65 - -
Glsi08g0622 237 SMART sant 12 62 IPR001005 -
Glsi08g0622 237 SMART sant 65 113 IPR001005 -
Glsi08g0622 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Glsi08g0622 237 FunFam MYB transcription factor 67 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0622 Glsi-ChrGlsi08 4988385 4989358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0622 2 211 MYB Transcription Factor Family AT4G38620 53.456 4.20e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0622 Myb_DNA-binding 3.2e-14 CL0123