Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0617 ATGGAAGAAGGAGTGCCCTCCAGAACCAATAGCCGTCGTGGACGTTGTTCACGTGTAATAACCTTTGTACAGAAGGTGGTTGCAGAATTGATCGGGACCTATTTCCTAATATTTGCGGGGTGCGGCGTTGTCACAGTGAATAAGATCTACGGTTCTGTCACATTTCCAGGCATTTGCGTCACTTGGGGCCTAATTGTGATGGCTTTGGTTTACACACTAGGTCATATCTCTGGAGCTCACTTCAATCCTGCAGTTACCATCACTTTAACCCTCCTTCGTCGGTTCCCCCTTAAAGAGGCGATACCATACATTGTGGTTCAACTATGTGGGGCGCTATTAGCTAGTATAACCTTAACAGCAGTCTTTGAAGTTACACCGGACTCTTATTTTGGAACTGTTCCAGTTGATTCTACTTTGCGGGCATTTGTTGTGGAAATCATCATCACCTTCCTCTTGATGTTTGTCATCTCTGGGGTTTCTACAGATGACAGAGCGGAAGGAGGATTCACGGGGGTCGCCGTTGGAATCACTATAATGCTGAATGTGTTTGTTGCTGGGCCTGTATCAGGAGCTTCCATGAACCCGGCAAGAAGCATTGCGCCTGCGGTTGTGAAAGGTATTTACACAGGTTTATGGGCTTACATTGCAGGTCCAATTATTGGAGCCATAGCCGGAGGGTGTGCCTATAGCTTGCTTAGATCCAGAGACAAGCCACTTCCAGCCGAAATTACCAATTGA 738 0.4688 MEEGVPSRTNSRRGRCSRVITFVQKVVAELIGTYFLIFAGCGVVTVNKIYGSVTFPGICVTWGLIVMALVYTLGHISGAHFNPAVTITLTLLRRFPLKEAIPYIVVQLCGALLASITLTAVFEVTPDSYFGTVPVDSTLRAFVVEIIITFLLMFVISGVSTDDRAEGGFTGVAVGITIMLNVFVAGPVSGASMNPARSIAPAVVKGIYTGLWAYIAGPIIGAIAGGCAYSLLRSRDKPLPAEITN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0617 245 SUPERFAMILY Aquaporin-like 17 241 IPR023271 -
Glsi08g0617 245 Pfam Major intrinsic protein 19 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 NCBIfam MIP family channel protein 28 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Glsi08g0617 245 CDD MIP 24 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi08g0617 245 PANTHER AQUAPORIN NIP2-1 16 237 IPR034294 -
Glsi08g0617 245 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0617 Glsi-ChrGlsi08 4956197 4957342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0617 1 239 Major Intrinsic Protein MIP AT5G37810 57.540 7.31e-103 298