Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0616 ATGGACACTTCTTCTTCCTCTGAGGGTCATAGCCCCGACGCGAATTTCGAAGCTGATTCAGCCCGTTCACCCATAGCCGTCCGCCGGGCGCTTCATCTCCTCCAATCGGACGACCCGGATTTTAGGCTCCAAGCTGCTCGGGATATCCGGCGGCTCACCAAGACGTCACAGCGCTGTCGGCGCCAGCTCTCTGAAGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCCCATGAACCGGCTCTTCTCGCTTTGCTTAACCTTGCCGTCAAAGACGAAAAGAACAAAATCAACATTGTGGAAGCTGGTGCTTTAGAACCGATAATTAGTTTCCTCAAGTCACGAAATTTAAGTCTGCGGGAGCACGCAACTGCGTCTTTGCTCACTCTATCTGCCTCTACAACCAACAAGCCTATTATTAGTTCTTCTGGAGCCATTCCTCTTCTTGTGGAGATTCTTAGAGATGGAAGCCTACAAGCTAAAGCGGATGCAGTAATGGCTCTTTCCAATTTATCCACATACCCAAATAATCTCAGCATCATTCTTGAAACAAATCCAGTCCCTTATATAGTCAATCTTCTTAAAGCTTGTAAAAAATCCTCAAAAACAGCTGAGAAATGCTGTGCTTTAATAGAATCCTTGGTGGGTTTTGATGAGGGAAGAACTGCCTTAACTTCTGAAGAAGGTGGGATTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCACTCTCCAAAGTAGGGAGCACGCGGTTGGAGCATTGTTGACAATGTGCGAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTAATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACCTAAGTCTCAGTTGAAAGCACGTACCCTTTTGCAATTACTTAGAGAGTCTCCTTATCCAAGATCTGAAATTGAACCTGACTCTCTTGAGAATATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCCGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTCAGACATTTACAGCAAAGGGCTCTTGTATGTACCCCAAGTGATCTGCCAATTACCAGCTGTGCTTCTGAAGTTCCTTCGAAATGA 1146 0.4607 MDTSSSSEGHSPDANFEADSARSPIAVRRALHLLQSDDPDFRLQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSRNLSLREHATASLLTLSASTTNKPIISSSGAIPLLVEILRDGSLQAKADAVMALSNLSTYPNNLSIILETNPVPYIVNLLKACKKSSKTAEKCCALIESLVGFDEGRTALTSEEGGILAVVEVLENGTLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIEPDSLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPITSCASEVPSK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0616 381 PANTHER U BOX DOMAIN-CONTAINING 25 307 - -
Glsi08g0616 381 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g0616 381 SUPERFAMILY ARM repeat 30 327 IPR016024 -
Glsi08g0616 381 FunFam U-box domain-containing protein 4 13 363 - -
Glsi08g0616 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 190 IPR000225 GO:0005515
Glsi08g0616 381 Gene3D - 179 359 IPR011989 -
Glsi08g0616 381 SMART arm_5 96 136 IPR000225 GO:0005515
Glsi08g0616 381 SMART arm_5 137 177 IPR000225 GO:0005515
Glsi08g0616 381 SMART arm_5 55 94 IPR000225 GO:0005515
Glsi08g0616 381 SMART arm_5 178 220 IPR000225 GO:0005515
Glsi08g0616 381 SMART arm_5 221 262 IPR000225 GO:0005515
Glsi08g0616 381 Pfam Armadillo/beta-catenin-like repeat 97 135 IPR000225 GO:0005515
Glsi08g0616 381 Gene3D - 13 178 IPR011989 -
Glsi08g0616 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 107 149 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0616 Glsi-ChrGlsi08 4950945 4954239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0616 27 304 U-box Gene Family AT2G23140 34.643 1.08e-38 144