Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0613 ATGGGTTTCTACCAAGGAACCTGCACTGAGTCGCGGGAGCCTTACAATGCGCCTGACGTTCCATACGCTTCCTCTGTAGTTGCAGATCATTACTGTGACTACAATAAGATCAAGTTCAGAACCATTTTGAGAAAAATGATCTGGGAGCTTGGGTTTGCCTGTGTTGCCCCGCCTCGTCGCCGGCGGGGCTCCGGGAAAAGTCAGGGTCAAGGCAAAAACGATGGCAACGCCCACACAAATTTAGAGCACAACAAGGCCTGGTTGCTGGCGGAATCTGGAGGGTGTGGAGCGGAGTTGACAAATGCTGACCCACAATCGGTTCACTCATCTTTCCGGTTCAGTTTCTGTTCTCAGGTTGAGCTCGAATCCTTGAACATGAATTCTTCCGCTGCTGCAACTGTTTTGATGGTGAATTTGGACAATGGAATGAGCGAATCTCGAGCCCGGGAGCTGAAATGGCGGAGAATAGAGTCGTTGGAGAAAAGCATATCCCCAGTAGCTAGCACTTTGATCAGGTTCAACTATGGTGAAATTCTATCTGCTACTCGCAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGAGCCTTGAGCTGTGTATTTAGGGGAAGAGTAGGGCTTTTGAGGACTGCTGTAGCAATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCAAAGGCATTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACCCAAACGTTGTTCCCTTTATGGGTTTTTGTATTGACCCAGAGGAGGGTTTATTTTTGGTGTACAAATATGTCTCCGGAGGCAGCTTGGAGCTTCACTTGCATGGGAGGAAGAAGGGTAGTTCACCACTTCCATGGTCTGCGAGGTATAAAGTTGCAATTGGAATTGCAGAAGCCATGGCTTATTTGCATCATGGAACTGAAAGATGCGTTGTTCACAGAGACATTAAGCCCTCAAACATTCTTCTTTCCTCTAAAAAGACTCCCAAATTATGTGATTTTGGATTAGCCACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGTTATTTGGCTCCTGAATATTTCCAACACGGGAAAGTATCTGATAAGACCGATGTCTATGCTTTTGGAGTGGTTTTACTGGAACTCATAACTGGCCGTAAGCCAATTGAAGCAAAAAAGCCACCAGGAGAGGAGAACTTGGTCTTATGGGCTAAACCCTTGCTACAGAAAGGGAAAGGAGCCATTGAAGAGTTGCTGGATCCTCAACTCAAGTGCAGTTTGAGATGCTCAAATCAGATGGCTCGGATGATTGAAGCAGCAGCTGCCTGTGTCACAAATGAAGAATCTCGAAGACCTGGAATACATGAGATCATTGCAATACTAAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAGAAAGAAGTCTGGTCTTCTTGGGAATGGATGCGTGATTGATTGTTACCCTCAATTACAACAAACAAATAGTGAGATGAAGAGTCACTTAGCTTTGGCAATGCTAGGAGTCTCAGAGTTCGAGGATGATGATTATCTCTATGGTCGTTGA 1566 0.4508 MGFYQGTCTESREPYNAPDVPYASSVVADHYCDYNKIKFRTILRKMIWELGFACVAPPRRRRGSGKSQGQGKNDGNAHTNLEHNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLNMNSSAAATVLMVNLDNGMSESRARELKWRRIESLEKSISPVASTLIRFNYGEILSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKESAKAFCRELMIASSLHNPNVVPFMGFCIDPEEGLFLVYKYVSGGSLELHLHGRKKGSSPLPWSARYKVAIGIAEAMAYLHHGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEAKKPPGEENLVLWAKPLLQKGKGAIEELLDPQLKCSLRCSNQMARMIEAAAACVTNEESRRPGIHEIIAILKGEEEPVFSKRKKSGLLGNGCVIDCYPQLQQTNSEMKSHLALAMLGVSEFEDDDYLYGR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0613 521 Gene3D Phosphorylase Kinase; domain 1 170 262 - -
Glsi08g0613 521 FunFam probable serine/threonine-protein kinase PBL7 146 262 - -
Glsi08g0613 521 Pfam Protein kinase domain 186 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0613 521 FunFam Putative receptor-like serine/threonine-protein kinase 263 477 - -
Glsi08g0613 521 PANTHER OS08G0249100 PROTEIN 133 475 IPR046958 -
Glsi08g0613 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Glsi08g0613 521 ProSiteProfiles Protein kinase domain profile. 185 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0613 521 SUPERFAMILY Protein kinase-like (PK-like) 173 464 IPR011009 -
Glsi08g0613 521 MobiDBLite consensus disorder prediction 58 77 - -
Glsi08g0613 521 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Glsi08g0613 521 SMART serkin_6 185 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0613 Glsi-ChrGlsi08 4925688 4928303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0613 166 499 Trihelix Transcription Factor Family AT1G70460 40.118 2.75e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi08g0613 Pkinase 6.8e-45 CL0016