Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0593 ATGGCTTCGTCCTTGGATATGTCCCTTGATGATAGAATAAAGAACAGAAGTAACAGAGATAGAGGTAGAGGACGTGGCAGAGCCCGCCGTGGCCGTGGACCTGGTGGAACTTTTGGTGGTGGAAGAATGACTGGTGCTGCTCGTAGAGGTCCTCTTGCAGTTAATGCTCGGCCATCATATTATGCTACTGCCAAGTATAGTCGCAGAACCAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATACAAGGAATAGAAATTGGCACAAAGTTGTATGTTTCAAACTTGGACCATGGAGTAACCAATGAAGATATAAGGGAACTTTTTTCTGAGATTAGAGGCTTGAAGCGATATGCAGTTCACTATGACAAAAATGGACGCTCAAGTGGATCAGCTGAAGTTATCTATACCAGAAGAAGTGATGCATTTGCCGCACTTAAACGATACAATAATGTACTTCTAGATGGAAAGCCCATGAAGATTGAAATTGTTGGTGCCAATGCAGAATTGCCTATAACTGCTCGGGTGAATGTTACTGGGGTAAATGGGCAGAGGAAGAGGACAGTTGTAATGACGCCTGGAGGAGGTCGAACTGGAGCTCCTGTTTTGCTTAATCGTGGAGCGGGTTGGGGACATCGTGGGGGTACAAGGAGTGATGGTAGGAGTGGGCGTCGAGGTCGTGGATATGCCAGGGGACGAGGCCGGGGTCGGGGTCGAGGTCAAGGTCAAGGTCGTGGGAAGGAGCCTATTGAGAAGTCAGCGGAGGAACTTGACAAGGAACTGCAGACCTATCATTCTGAGGCCATGCACATCGCATGA 840 0.4821 MASSLDMSLDDRIKNRSNRDRGRGRGRARRGRGPGGTFGGGRMTGAARRGPLAVNARPSYYATAKYSRRTRPFPWQHDLFEDSLRAAGIQGIEIGTKLYVSNLDHGVTNEDIRELFSEIRGLKRYAVHYDKNGRSSGSAEVIYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPITARVNVTGVNGQRKRTVVMTPGGGRTGAPVLLNRGAGWGHRGGTRSDGRSGRRGRGYARGRGRGRGRGQGQGRGKEPIEKSAEELDKELQTYHSEAMHIA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0593 279 CDD RRM_THOC4 96 170 - -
Glsi08g0593 279 Gene3D - 92 172 IPR012677 -
Glsi08g0593 279 SUPERFAMILY RNA-binding domain, RBD 17 170 IPR035979 GO:0003676
Glsi08g0593 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Glsi08g0593 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Glsi08g0593 279 Pfam C-terminal duplication domain of Friend of PRMT1 222 273 IPR025715 -
Glsi08g0593 279 MobiDBLite consensus disorder prediction 1 48 - -
Glsi08g0593 279 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 277 - -
Glsi08g0593 279 MobiDBLite consensus disorder prediction 248 266 - -
Glsi08g0593 279 SMART rrm1_1 97 169 IPR000504 GO:0003723
Glsi08g0593 279 MobiDBLite consensus disorder prediction 199 266 - -
Glsi08g0593 279 SMART FoP_duplication_2 202 279 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0593 Glsi-ChrGlsi08 4821593 4825271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0593 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.47e-09 55.8