Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0589 ATGGGAAGGCAACCCTGCTGTGATAAAGTTGGATTGAAGAAGGGGCCGTGGACAGCAGAGGAGGACAAGAAGCTCATCAGCTTCATCCTCGCTAATGGTCAATGTTGCTGGAGAGCGGTCCCTAAGCTTGCAGGGCTATTAAGGTGTGGGAAGAGTTGTAGGCTGAGATGGACAAACTACCTGAGGCCAGACTTAAAGAGAGGCCTTCTATCAGAACATGAAGAGAAAATGGTTATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACGCACATAAAGAAAAAGCTAAAAAAGATGGGCATTGATCCTGTCACCCACAAGCCACTCTCCTCCGACACTCTAACTGAAAATCAGCAACCTCAAACCCCACAAAAACCTCACCTCCTCCAACCATTACAAGAACAAGAACAACAGAAGCAAGAGCTGTCTCTGCCAGTTAACCCAGAATTTGAATCTGAAATTAACCAAAGTAAGGAGCCAGAGACTTCATTTGAGTCGTCAACCATTACTGGAGCTAAAGAGGAAGACAAAAATATGATTACACCACCTTTTGACACGTTAATGGGGACAATAATGAATGAGTTCTGCACAGATGAAGTTCCAATTATAGAACCCCACGAGATTCTGGTCCCATGTGGTCCCTCTTCTTCATCAACATGCTGCACATCTTCATCATCATCATCTTCTTCTTCTTCTTCAAATTCTTCCAACTTCCTCGAAGACTTGCAGCTCCCAGATTTTGAGTGGCCTTGTATTTACACTGACAATAATATTAACAATAATAACAACAGCAACAACAATAGTATGGAATTATGGGATGATGACTTGTTTACAAGTTTGGATTTGCTGATCAATGACGAAAATAGTAGCAGAAAGCAAGTGTTTGATGCTCCTCTCAGTCAATTTCCAAGAACAGTCATGGATTCAGAATCTTGGGCATACGGGTTGTTTTAA 1014 0.4221 MGRQPCCDKVGLKKGPWTAEEDKKLISFILANGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEHEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSSDTLTENQQPQTPQKPHLLQPLQEQEQQKQELSLPVNPEFESEINQSKEPETSFESSTITGAKEEDKNMITPPFDTLMGTIMNEFCTDEVPIIEPHEILVPCGPSSSSTCCTSSSSSSSSSSSNSSNFLEDLQLPDFEWPCIYTDNNINNNNNSNNNSMELWDDDLFTSLDLLINDENSSRKQVFDAPLSQFPRTVMDSESWAYGLF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0589 337 CDD SANT 16 61 IPR001005 -
Glsi08g0589 337 MobiDBLite consensus disorder prediction 117 200 - -
Glsi08g0589 337 PANTHER F14D16.11-RELATED 1 288 - -
Glsi08g0589 337 FunFam MYB transcription factor 11 67 - -
Glsi08g0589 337 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Glsi08g0589 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi08g0589 337 FunFam Myb transcription factor 71 133 - -
Glsi08g0589 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi08g0589 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi08g0589 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi08g0589 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi08g0589 337 CDD SANT 71 112 IPR001005 -
Glsi08g0589 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi08g0589 337 Gene3D - 11 67 - -
Glsi08g0589 337 SMART sant 66 114 IPR001005 -
Glsi08g0589 337 SMART sant 13 63 IPR001005 -
Glsi08g0589 337 Gene3D - 70 162 - -
Glsi08g0589 337 MobiDBLite consensus disorder prediction 128 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0589 Glsi-ChrGlsi08 4785046 4786922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0589 1 315 MYB Transcription Factor Family AT1G66230 55.346 4.32e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0589 Myb_DNA-binding 1.7e-12 CL0123