Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0574 ATGCCTGGGAAGAAGGTGATGCGGGAGGTGGTGGAGGAGGAAGGGAACCAAATGGCGTCGTCTTCGAGATCATCTTCGTCGTCGTCGTCGTCATCTTCGGATGAGAGAGAGTATGAAGTTCAGGACCTGAGAGACAGATTGAAATCGTCGCGAGGAAGCCGATTCGATTTGATAGTGAACGAGATGGGACTCAATTGGACTCAGAGGAAGTTCAGTCGCCAAGTCTTTGATGGCATCCGAGGCCTCTCCAAAGATTTCATTATCCATCCAGAGAACAGGTGGTATAGGGCATGGATAAAATTCATATTGCTGTGGGCAATGTACTCGTCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGGCTTCCTGAAAATCTCTTTGTACTAGACGTAATTGGACAAATAGCTTTTCTTGTAGACATTGCTTTGCAGTTCTTTCTCGCTTATAGAGACAGCCAGACCTATCGTATGATCTACAAGCGAACCCCTATTGCTCTGCGGTATCTAAAATCTAGCTTTATCTTTGATCTTCTTGGATGTATGCCTTGGGACATCATCTACAAGGTTTGTGGAAGAAGAGAGGAGCTGAGGTATCTTTTGTGGATCAGATTATATCGGGTGCGTAAAGTCACTGATTTTTTCCACAGGTTGGAGAAGGATATACGTATCAATTACATGTTTACTAGGATTGTGAAACTTTTAGCAGTTGAACTCTACTGCACCCATACGGCAGCTTGCATCTTCTACTATTTGGCCACCACACTACCTCCATCCCAAGAGGGGTATACATGGATAGGAAGTTTGCAGCTGGGTGACTTTAGTTATTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTATACAACATCTTTGTATTTTGCTATTGTTACGATGGCTACTGTCGGCTATGGAGATATACATGCAGTCAATCTGAGGGAGATGATATTCATAATGATATATGTCTCGTTTGACATGGTTCTTGGTGCTTATTTAATTGGTAACATGACGGCTTTGATAGTCAAAGGATCAAAGACTGAAAAGTTTAGGGATAAAATGACGGATCTTATGAAATATATGAATAGAAACAGACTTGGAAGGGACATCCGTGAACAAATAAAAGGCCATGTGCGCTTACAGTATGAGAGTAGCTACACAGAGGCTGCTGTCATTCAGGACATCCCCATTTCTATTCGCTCTAAGATATCCCAAACATTATATTTGCCATACATTGAAAAGGTTTCTCTCTTTAGGGGTTGCTCCTCAGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGGAATTCTTTCTCCCAGGGGAAGTGATATTGGAACAAGGAAATGTTGTTGATCAACTATACTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCACAGGTGAAGATGGATCTGAAGAGACTATTTCACTTTTACAACCTGACAGTTCATTTGGGGAAGTATCTATTCTATGTAACATTCCTCAGCCATATACTGTTCGGGTTTGTGAACTATGTAGGCTTGTGCGGCTTGATAAGCAATCATTTACAAATATCCTTGATATATACTTTTATGATGGGAGAAAAGTATTAAACAACCTTCTAGAGGGAAAAGAAGGTTTTCGAGGTAAGCAACTGGAGTCAGACATCACATTTCATATTGGGAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAATAATGCAGCATTTGATGGGGACTTATATCAGCTTAAAGGTTTGATTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCCCCTTTGCACCTTGCTGCATCTAAAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAAATGTCAACATTAGAGATAATTTTGGAAACACACCTTTACTTGAGGCAGTTAAGAATGGACATGACCGAGTTGCTTCCTTACTTGTTGGAGAAGGGGCTTCTATGAAGATAGACAATGCTGGTAGTTTTCTATGTACAGCTGTTGCAAGGGGAGATTCAGATTTTCTTAAAAGGCTGTTATCTAATGGTATGGATCCTAACTCAAAAGACTATGATTACCGAAGCCCTCTCCATGTTGCTGCTGCTGAAGGCTTATTCTTCATGGCAAAGTTGCTATTAGAAGCAGGAGCTAGTGTTTTTATCAAAGACAGATGGGGAAACACCCCACTTGATGAAGCCCGGATGAGTGGAAATAAGAATCTGATCAAGCTACTGGAAGAGGCAAAGTCTGCTCAGTTGTCAGAATTCCCATATCCCTCCCCAGAATTTACAGATAAGTTTCACCCAAAGAAGTGCACAGTGTTCCCTTTTCACCCTTGGGATCCAAAAGAACATAGAAGACATGGAATTGTGCTATGGGTTCCACACACCATTGAAGAGCTTATCATAGCAGCAGCAAAGCAGCTAGAATTATCTAGTGATTGTTGTATTTTATCAGAAGACGCTGGTAAAATTACTGATGTGAACATGATTAAGGATGGTCAAAAGCTGTATTTAGTCCATGAAACACATTGA 2526 0.4117 MPGKKVMREVVEEEGNQMASSSRSSSSSSSSSSDEREYEVQDLRDRLKSSRGSRFDLIVNEMGLNWTQRKFSRQVFDGIRGLSKDFIIHPENRWYRAWIKFILLWAMYSSFFTPMEFGFFRGLPENLFVLDVIGQIAFLVDIALQFFLAYRDSQTYRMIYKRTPIALRYLKSSFIFDLLGCMPWDIIYKVCGRREELRYLLWIRLYRVRKVTDFFHRLEKDIRINYMFTRIVKLLAVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLQLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRSKISQTLYLPYIEKVSLFRGCSSEFINQIVIRLHEEFFLPGEVILEQGNVVDQLYFVCHGVLEEVGTGEDGSEETISLLQPDSSFGEVSILCNIPQPYTVRVCELCRLVRLDKQSFTNILDIYFYDGRKVLNNLLEGKEGFRGKQLESDITFHIGKQEAELALKVNNAAFDGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASKGYEDITLFLIQEGVNVNIRDNFGNTPLLEAVKNGHDRVASLLVGEGASMKIDNAGSFLCTAVARGDSDFLKRLLSNGMDPNSKDYDYRSPLHVAAAEGLFFMAKLLLEAGASVFIKDRWGNTPLDEARMSGNKNLIKLLEEAKSAQLSEFPYPSPEFTDKFHPKKCTVFPFHPWDPKEHRRHGIVLWVPHTIEELIIAAAKQLELSSDCCILSEDAGKITDVNMIKDGQKLYLVHETH 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0574 841 ProSiteProfiles KHA domain profile. 768 841 IPR021789 -
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Glsi08g0574 841 Gene3D - 658 752 IPR036770 -
Glsi08g0574 841 PRINTS Ankyrin repeat signature 593 608 IPR002110 GO:0005515
Glsi08g0574 841 PRINTS Ankyrin repeat signature 705 719 IPR002110 GO:0005515
Glsi08g0574 841 PANTHER POTASSIUM CHANNEL AKT1 66 838 IPR045319 GO:0005249|GO:0006813
Glsi08g0574 841 SUPERFAMILY Voltage-gated potassium channels 90 341 - -
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Glsi08g0574 841 MobiDBLite consensus disorder prediction 1 39 - -
Glsi08g0574 841 FunFam Potassium channel KAT2 404 541 - -
Glsi08g0574 841 Pfam Cyclic nucleotide-binding domain 436 520 IPR000595 -
Glsi08g0574 841 SMART ANK_2a 722 752 IPR002110 GO:0005515
Glsi08g0574 841 SMART ANK_2a 656 685 IPR002110 GO:0005515
Glsi08g0574 841 SMART ANK_2a 625 654 IPR002110 GO:0005515
Glsi08g0574 841 SMART ANK_2a 689 718 IPR002110 GO:0005515
Glsi08g0574 841 SMART ANK_2a 592 621 IPR002110 GO:0005515
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat region circular profile. 625 656 - -
Glsi08g0574 841 Pfam Ion transport protein 96 341 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi08g0574 841 SUPERFAMILY Ankyrin repeat 565 744 IPR036770 -
Glsi08g0574 841 FunFam Gated outwardly-rectifying K+ channel 631 757 - -
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Glsi08g0574 841 Gene3D Jelly Rolls 400 536 IPR014710 -
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat region circular profile. 689 721 - -
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Glsi08g0574 841 FunFam Potassium channel SKOR 96 341 - -
Glsi08g0574 841 Pfam KHA, dimerisation domain of potassium ion channel 767 836 IPR021789 -
Glsi08g0574 841 CDD CAP_ED 416 530 IPR000595 -
Glsi08g0574 841 Pfam Ankyrin repeats (3 copies) 662 743 IPR002110 GO:0005515
Glsi08g0574 841 Pfam Ankyrin repeats (3 copies) 567 654 IPR002110 GO:0005515
Glsi08g0574 841 SUPERFAMILY cAMP-binding domain-like 344 533 IPR018490 -
Glsi08g0574 841 SMART cnmp_10 416 534 IPR000595 -
Glsi08g0574 841 MobiDBLite consensus disorder prediction 15 34 - -
Glsi08g0574 841 Gene3D - 549 657 IPR036770 -
Glsi08g0574 841 PRINTS EAG/ELK/ERG potassium channel family signature 240 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g0574 841 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g0574 841 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g0574 841 PRINTS EAG/ELK/ERG potassium channel family signature 131 141 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g0574 841 ProSiteProfiles Ankyrin repeat region circular profile. 592 624 - -
Glsi08g0574 841 Gene3D - 98 342 - -
Glsi08g0574 841 Gene3D Helix hairpin bin 343 399 - -
Glsi08g0574 841 ProSiteProfiles cAMP/cGMP binding motif profile. 416 536 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0574 Glsi-ChrGlsi08 4676098 4691695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0574 663 752 Ion Channels AT5G37500 34.513 3.44e-09 58.5