Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0570 ATGACTAGAAAAAAGGTGAAACTGGCATTCATAGCTAATGAGTCTGCGAGGAAAGCAACATATAAGAAAAGAAAGAAGGGTCTGATAAAGAAGGTAGATGAACTCACGACTCTTTGCGGAATCGAAACTTGTGCTATATTGTATAGCCCCTACGATTCTCAGCCGGAAGTTTGGCCATCCCAATTTGGGGTCCAAAGGGTGCTCTCCAAGTTCAGGAGAATGCCAGAATTGGAGCAGAGCAAGAAGATGGTGAACCAGGAGGGGTTCCTGAAGCAGAGGATTCTGAAGGCCAAAGAGCAGGTGAAGAAACAGAGGAAGGACAATAGGGAGAAGGAGATGACCCAGATAATGTATCAGTACCTTAGTGCGGGGAAGGTTCTGCACAACATGAGCATGATTGATCTGAACGATCTGGCATGGCTGATTGAACAGAACTTGAAGGAGATCAATCGGAGGATGGAGACGCTGAACAAGAGGGCTCAGAGTCAGAGCCAAGCCCAAGTGGCTGCGATGGCGGCAGCAGATGCGGCTGCGGCGAGGGGCAGAGACAAGGCGAAGGTGGAAGAGGTGGAGGAGATGAACGGTGACGACATGCCAAAGCAGCAGTGGTTCATGGACCTGATGAGTGGTGGCGGTGGGGACGAGACTTTGCCATTTGGAGACGTCAATCACCCAAATGCTTTCTGGCATAATCACTATTTCCCTTGA 708 0.4958 MTRKKVKLAFIANESARKATYKKRKKGLIKKVDELTTLCGIETCAILYSPYDSQPEVWPSQFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQVKKQRKDNREKEMTQIMYQYLSAGKVLHNMSMIDLNDLAWLIEQNLKEINRRMETLNKRAQSQSQAQVAAMAAADAAAARGRDKAKVEEVEEMNGDDMPKQQWFMDLMSGGGGDETLPFGDVNHPNAFWHNHYFP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0570 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Glsi08g0570 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Glsi08g0570 235 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Glsi08g0570 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 PANTHER MADS BOX PROTEIN 3 157 - -
Glsi08g0570 235 Coils Coil 94 114 - -
Glsi08g0570 235 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Glsi08g0570 235 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Glsi08g0570 235 Coils Coil 139 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0570 Glsi-ChrGlsi08 4662241 4662948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0570 1 176 Type I MADS-box Gene Family AT5G48670 59.091 5.77e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi08g0570 SRF-TF 4.5e-16 No_clan