Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0569 ATGGTTTTATCTTGGACAAGAAGAAGAGTTTTCCGCCGTGGCCACAAAGGGAAACAGCCTCCCGGCGGCGATTTGGACGTGGAAGTGGCTGTTCCCACCCATTTCCGGTGCCCGATTACTCTGGATTTGATGAAAGATCCGGTGACTTTGTGTACCGGGATTACCTACGATAGAGAGAGCATCGAGAAGTGGGTCGACGCCGGGAACCAGACATGCCCGGTCACTAATCAGGTGTTGACGAGCTTCGACACGATCCCTAACCATGCCATTCGAAGGATGATTCAAGATTGGTGTGTGGAACATCGATCTTCTGGGATTGAAAGGATTCCCACTCCGCGGATCCCGGTTTCGCCCTACGAAGTTTCGGAGATTTGTTCGAGGATAATGTCTGCTACTCAACGCGGGGATAACAACAAGTGCCAACAATTGGTGGGGAAGATCAAGGTTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGTATATTGGACAATGGGGCTGGGATTGTGTTGGCCAATGCCTTGGATTTTTTCTCAAGTGGTTCGATCGAGAAAAATGTGGGTGTTTTGGAGGACATCTTGGGGGTGCTAACATGGAGGTTCCCACTTGGAGAAGAGGGTCAATCAATGTTGGGTTCAGCAAACTCTTTACGTTGCATGGTTTGGTTCCTCAATAGTAAAGACCTCACAGCAAGACAAAATGCTGCTTTGGTGCTCAAGCAAGTGCCTGCTGAGGCATTGGCAAAAGCTGAAGGTGTTATTGAAGCTTTGGTTAAGATGATTAGGGAGCCTACAGGGCCTTCTGCTACCAAGGCATGCTTGACAACAATTTTCCAGTTGGTTTCCTCATCAGAGGACAAAGACAGAATGACAAAAAGATCTGTGGAATTGGGTCTGGTTTCGTTGTTGCTGGAAGCCATGGTTGATGCAGATAAAGGTGTATGTGAAAAGGCTTTGGGTGTGTTGGATTGTATCTGTGATTGCAAAGAAGGGAAGGAAATGGCAAAGGCAAATGCTCTGACCTTGCCTCTTGCAGTTAAGAAGATTCTACGTGTATCAGGGTTGGCTTCTAATTTTGCAGTCTCTATTCTTTGGAAGCTTTGTGACAAGAGGGATGAAGGTGGTGTTGTGGTTGAGGCAGTTCAAGTGGGAGCATTTCAGAAACTCTTGGTTCTACTGCAGATTGGGTGTGGTGAGAGCACAAAGGAGAAGGCTACTGAGTTGTTGAAATTGTTGAATGCTCACAGGAGCAGAGCAGAGTACTGTGTTGATTCATCGTTGGATTTGAAGCACCTTAAGAAGCCCTTTTGA 1308 0.4717 MVLSWTRRRVFRRGHKGKQPPGGDLDVEVAVPTHFRCPITLDLMKDPVTLCTGITYDRESIEKWVDAGNQTCPVTNQVLTSFDTIPNHAIRRMIQDWCVEHRSSGIERIPTPRIPVSPYEVSEICSRIMSATQRGDNNKCQQLVGKIKVWGKESERNKRCILDNGAGIVLANALDFFSSGSIEKNVGVLEDILGVLTWRFPLGEEGQSMLGSANSLRCMVWFLNSKDLTARQNAALVLKQVPAEALAKAEGVIEALVKMIREPTGPSATKACLTTIFQLVSSSEDKDRMTKRSVELGLVSLLLEAMVDADKGVCEKALGVLDCICDCKEGKEMAKANALTLPLAVKKILRVSGLASNFAVSILWKLCDKRDEGGVVVEAVQVGAFQKLLVLLQIGCGESTKEKATELLKLLNAHRSRAEYCVDSSLDLKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0569 435 Gene3D - 121 426 IPR011989 -
Glsi08g0569 435 PANTHER WDSAM1 PROTEIN 28 414 IPR045185 GO:0061630
Glsi08g0569 435 SUPERFAMILY RING/U-box 26 106 - -
Glsi08g0569 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 108 IPR013083 -
Glsi08g0569 435 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Glsi08g0569 435 CDD RING-Ubox_PUB 32 83 IPR045210 -
Glsi08g0569 435 SUPERFAMILY ARM repeat 154 408 IPR016024 -
Glsi08g0569 435 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Glsi08g0569 435 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Glsi08g0569 435 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0569 Glsi-ChrGlsi08 4659207 4660514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0569 21 435 U-box Gene Family AT5G37490 49.644 3.23e-137 399