Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0568 ATGAAGAAGAAAACTCACATCAAGTACGAGCATTTAACCATTTTCGTTGCTGGGTTCTTGTCAATCTTCCTCTGCGTCGAGTCTCAACCCAACCCAAGCCAAGATGCTCCTGTAATGTTAGCTCTCAAGAAGAGCCTCAGCCCCCCGGAGTCTCTAGGATGGTCTGATCTAGACCCCTGCAAATGGAACCACGTTGTTTGCTCCGATGAAAAACGGATCACACGGATCCAAATCGGCCGTCAAGGGCTTCAAGGTACGCTTCCACCGAATCTCCAAAATCTTACTGAGTTAGAGCACTTGGAGCTTCAATATAATAACATTTCGGGTCCTCTACCCAGCTTAAATGGCTTGAGTTCATTACAAGTACTTATGCTTAGTAACAACCAATTTAGCTCGATCCCCAGTGACTTTTTCATTGGTATGTCTCAACTTCAATCCGTGGAAATCGACAACAACCCATTTGAGGATTGGGAAATACCCGAAAGTCTCCAAAACGCTTCGGCACTTCAGAACTTCTCTGCGAACTCGGCTAATATCAAAGGCAAAATACCGGAATTTTTCGGTTCTGCTGTGTTTCCTGGTTTGGCACATTTGCATTTGTCATTCAATAACCTTGAGGGTGAAATGCCTGCGAGCTTTTCTGGGTCACAAATTGAGACTTTGTGGGTTAATGGGCAAAAGAGTGTTGGTAAGCTCAGTGGACCTATAGATGTTATACAGAATATGACTTTCTTGACAGAGATTTGGTTGCATACAAATGCGTTTTCGGGTCCATTACCGAAACTTTCAGGTTTGAAAAATTTGCAGACCCTGAGTTTGAGAGATAATTCGTTTACTGGTCCTGTTCCGATGTCTCTAGTAAATCTTAAATCACTTAAAGTTGTGAATTTGACTAATAACCTGTTTCAAGGGCCCCTGCCAGTGTTTAATCCTGGGGTTGCTGTTGATATGAGTAAGGATTCGAATAGCTTTTGCTTGCCAAGTCCTGGAGATTGTGATCCACGGGTGAATATTCTGCTTTCTATTGTTGAATTCATGGGCTATCCTCAAAGGTTTGCTGACAGTTGGAAGGGTAATGATCCTTGTGCTGATTGGCTAGGGATAACCTGTAGTAATGGGAACATTACCATTGTCAATTTTCAGAAGATGGGTCTTACGGGTATGATATCCCCAGAGTTTTCCTCGCTCAAATCACTGCAAAGGCTCGTGCTTGCTGATAACAATCTCACTGGTTTGATTCCAGAGGAGCTTACTACTCTTACTGGACTCACTGAACTGAATGTTGCAAACAATCAGCTATATGGAAAAATCCCAACTTTCAAGAGTAATGTACTTATCAACACAAACGGTAACAAAGACATAGGGAAGGATAAAATTAATTCATCCCCTCAACATTCACCATTGCCAAACCAGACAGGTCCAACTACAAGGGAAAAAAATGATGGGGGTTCTGGAAATAGCGGCAAAAGATCTTCCCATGTAGGGGTAATTGTGTTTGCTGTGATTGGGGGTGTATTTGTTGTTTCAGTGATTGGTTTCTTAGTTTTCTGCGTGTTTAGACTGAAGGAAAAGCGGCTAAGCAGGGTGCAGAGCCCAAATGCACTAGTTATTCACCCTCATCATTCTGGATCAAATAATGAAAGTGTGAAGATAACGGTTGCCAGTTCAAGTGTTAGTGTTGGTGCAGTTAGTGAAACGCAAACTGTACCAAGCAGTGAGGCGGGAGACATTCAAATGGTTGAAGCAGGAAACATGATCATTTCTATACAAGTCCTGAGAAGCGTTACCAACAATTTCAGTGAGAAAAATATATTAGGACAAGGAGGTTTTGGAACTGTTTATAAAGGTGAACTGCATGATGGTACAAAAATTGCAGTGAAAAGAATGGAGTCCGGGGCAATTGCTGGGAAGGGTGTAGCAGAATTCAAGTCTGAAATTTCTGTTTTGACGAAGGTTCGGCACCGGCATCTTGTTGCTCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTACGAATATATGCCTCAAGGGACGCTAAGTAGGCATATCTTCAACTGGCCAGAAGAAGGACTGAAACCACTGGAGTGGAATAGAAGGTTGATCATTGCTTTAGATGTGGCAAGGGGTGTTGAATACCTCCATGGCTTGGCTCATCAGAGCTTCATACATAGGGACTTAAAACCTTCAAACATTCTTCTCGGAGACGATATGAGGGCAAAGGTTGCAGACTTTGGTCTTGTCCGTCTTGCCCCAGAAGGAAAAGCCTCCATAGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCACCAGAATATGCAGTCACTGGCCGTGTGACAACTAAAGTTGATATGTTCAGTTTTGGGGTAATACTGATGGAGCTAGTAACCGGAAGAAAAGCACTCGATGAGACACAGCCTGAGGACAGCATGCACCTAGTAACATGGTTCCGCAGGATGTACATAAACAAGGACACATTCCGCAAGTCCATAGACCCCATAATCGAGCTGAATGAGGAAACGCTTGCTAGTATTCACACTGTGGCACAGTTAGCTGGGCACTGTTGTGCAAGGGAGCCATATCAGAGGCCTGACATGGGGCATGCAGTGAATGTGCTTTCTTCTCTTGTAGAACTCTGGAAACCATCTGATCAGAATTCTGAAGATATATATGGCATTGACCTCGAAATGTCTTTACCACAAGCGCTAAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAGTCTTCATCTTCTTCACTCCTTCCCAGCTTGGACAACACCCAGACAAGCATACCTACTCGCCCATATGGTTTTGCCGAGTCTTTCACATCAGCAGATGGGAGGTGA 2859 0.4362 MKKKTHIKYEHLTIFVAGFLSIFLCVESQPNPSQDAPVMLALKKSLSPPESLGWSDLDPCKWNHVVCSDEKRITRIQIGRQGLQGTLPPNLQNLTELEHLELQYNNISGPLPSLNGLSSLQVLMLSNNQFSSIPSDFFIGMSQLQSVEIDNNPFEDWEIPESLQNASALQNFSANSANIKGKIPEFFGSAVFPGLAHLHLSFNNLEGEMPASFSGSQIETLWVNGQKSVGKLSGPIDVIQNMTFLTEIWLHTNAFSGPLPKLSGLKNLQTLSLRDNSFTGPVPMSLVNLKSLKVVNLTNNLFQGPLPVFNPGVAVDMSKDSNSFCLPSPGDCDPRVNILLSIVEFMGYPQRFADSWKGNDPCADWLGITCSNGNITIVNFQKMGLTGMISPEFSSLKSLQRLVLADNNLTGLIPEELTTLTGLTELNVANNQLYGKIPTFKSNVLINTNGNKDIGKDKINSSPQHSPLPNQTGPTTREKNDGGSGNSGKRSSHVGVIVFAVIGGVFVVSVIGFLVFCVFRLKEKRLSRVQSPNALVIHPHHSGSNNESVKITVASSSVSVGAVSETQTVPSSEAGDIQMVEAGNMIISIQVLRSVTNNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAIAGKGVAEFKSEISVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHIFNWPEEGLKPLEWNRRLIIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDMFSFGVILMELVTGRKALDETQPEDSMHLVTWFRRMYINKDTFRKSIDPIIELNEETLASIHTVAQLAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLEMSLPQALKKWQAYEGRSQMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0568 952 Gene3D Ribonuclease Inhibitor 32 332 IPR032675 -
Glsi08g0568 952 Gene3D Ribonuclease Inhibitor 334 458 IPR032675 -
Glsi08g0568 952 SUPERFAMILY Protein kinase-like (PK-like) 576 883 IPR011009 -
Glsi08g0568 952 MobiDBLite consensus disorder prediction 455 490 - -
Glsi08g0568 952 MobiDBLite consensus disorder prediction 918 941 - -
Glsi08g0568 952 FunFam receptor protein kinase TMK1 677 894 - -
Glsi08g0568 952 Pfam Leucine rich repeat 393 433 IPR001611 GO:0005515
Glsi08g0568 952 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Glsi08g0568 952 SMART LRR_typ_2 420 442 IPR003591 -
Glsi08g0568 952 SMART LRR_typ_2 396 419 IPR003591 -
Glsi08g0568 952 SMART LRR_typ_2 265 288 IPR003591 -
Glsi08g0568 952 SMART LRR_typ_2 94 116 IPR003591 -
Glsi08g0568 952 SMART LRR_typ_2 117 140 IPR003591 -
Glsi08g0568 952 SMART LRR_typ_2 192 215 IPR003591 -
Glsi08g0568 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Glsi08g0568 952 ProSiteProfiles Protein kinase domain profile. 599 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0568 952 Pfam Protein kinase domain 600 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0568 952 MobiDBLite consensus disorder prediction 918 952 - -
Glsi08g0568 952 CDD STKc_IRAK 605 878 - -
Glsi08g0568 952 SMART serkin_6 599 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0568 952 PANTHER OSJNBA0070M12.3 PROTEIN 19 952 - -
Glsi08g0568 952 ProSiteProfiles Leucine-rich repeat profile. 119 140 IPR001611 GO:0005515
Glsi08g0568 952 SUPERFAMILY L domain-like 45 308 - -
Glsi08g0568 952 Pfam Leucine rich repeat N-terminal domain 338 371 IPR013210 -
Glsi08g0568 952 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Glsi08g0568 952 FunFam Receptor-like kinase TMK4 33 330 - -
Glsi08g0568 952 Gene3D Transferase(Phosphotransferase) domain 1 677 897 - -
Glsi08g0568 952 Gene3D Phosphorylase Kinase; domain 1 559 676 - -
Glsi08g0568 952 ProSitePatterns Protein kinases ATP-binding region signature. 605 637 IPR017441 GO:0005524
Glsi08g0568 952 FunFam receptor protein kinase TMK1 561 676 - -
Glsi08g0568 952 FunFam Leucine-rich repeat receptor-like kinase 334 457 - -
Glsi08g0568 952 SUPERFAMILY L domain-like 338 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0568 Glsi-ChrGlsi08 4652533 4655501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0568 73 881 Receptor kinase-like Gene Family AT5G07280 32.658 1.85e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi08g0568 Pkinase 3.2e-46 CL0016