Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0566 ATGAAAGCAAACTTCGATCTTCAAGTGGAGGCCCTTGCACAAAATGAATTTGAAGTTAGCAGCCAAGTTGCTTCCAATATATCTGTCCAAGAAACCTTTGCTGGTCCTTGTAGTGAAAGTCTCACTAACTGTTCCAGCCTCGCAAATCCAACAGGGACTCATGCACATTCAGATTCTATTTCACTTGACTTAGCTCTCAACTTCAATAATAATGAGTTAGGAGCAAGAGATTCCATAGGACTCTCATTCTCAAGCACCAGTGAGAGCAGCAACGAACCTGCCTCTCAAACTACAGCAGCAACCATGCCAAGAGTTTTCTCATGCAATTACTGTCAGCGTAAATTTTATAGTTCGCAGGCACTTGGGGGCCACCAAAATGCCCACAAGAGAGAAAGATCACTGGCAAAGCAGGCTATGCGAATGGGGTTTTTCTCTGAGAGGTATGCTAGTCTAGCGTCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTGGGGATAAAAGCACACTCTTCACTGCATCATGGTTTTTCACCAACAATGAGGCCTCCTGAGATTAAAAGCAATGGAAGATTTGAGAAAGGATGTTTTGGTCAGCCAATATTCTTGGAGGATGATGAGGCAGAACTGTTGTGGCCTGGTAGTTTCCGTCAGGTTGCAGAGGTAGGTGATGATGCTCATAAGAATTTCCTACTGACCGAAAGTTCAGATTTGAGTTTTAGGGAGGTGAATCCACCAGTAGACATAGAGAACTCGACACCAGATTTGACATTAAAACTTTGA 777 0.4389 MKANFDLQVEALAQNEFEVSSQVASNISVQETFAGPCSESLTNCSSLANPTGTHAHSDSISLDLALNFNNNELGARDSIGLSFSSTSESSNEPASQTTAATMPRVFSCNYCQRKFYSSQALGGHQNAHKRERSLAKQAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEIKSNGRFEKGCFGQPIFLEDDEAELLWPGSFRQVAEVGDDAHKNFLLTESSDLSFREVNPPVDIENSTPDLTLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0566 258 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Glsi08g0566 258 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Glsi08g0566 258 Gene3D Classic Zinc Finger 84 151 - -
Glsi08g0566 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Glsi08g0566 258 FunFam Zinc finger protein 2 83 152 - -
Glsi08g0566 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 50 184 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0566 Glsi-ChrGlsi08 4646081 4646857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0566 88 258 C2H2 Transcription Factor Family AT1G66140 52.284 1.50e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g0566 None None None