Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0553 ATGTTTAAACATTTTGGGCATCCAAGAAGTGATTATGATTTTTCGATTGAGACTATGCTCTCCTTTCCTTCCTTAGAAGCCGCTTCATCACCACTCACACCATTTAACTCCCCCCCACCCCCTCTCCTTCTCTCTAATTACTCTCTCTTGTTCTTAATTTCTCTCTTTTTTGCCATGGTTCTGTCGAAGACTTCCTCCCACACCGACGTCTCCATTCACTCAACCTTCGCTTCCCGTTATGTGCGCACCTCCCTTCCCAGGTTCAAGATGGCGGAGCATTCGATCCCCAAGGAGGCGGCGTACCAGATAATCAACGACGAGCTCATGCTGGATGGGAACCCAAGGCTTAACCTTGCCTCCTTCGTCACCACCTGGATGGAGCCTGAGTGCGACAAGCTCATCATGTCCTCCATTAACAAGAACTACGTCGATATGGACGAGTACCCTGTCACCACTGAACTCCAGAATCGGTGTGTGAACATGATAGCTCATCTTTTTAATGCGCCACTTCAAGAGTCAGAGCCTGCTGTTGGTGTTGGGACGGTTGGCTCATCGGAGGCCATAATGTTGGCTGGCTTGGCATTCAAAAGGAAGTGGCAGAACAAAATGAAAGCAGAGGGAAAGCCTTATGACAACCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAAAAATTTGCAAGATACTTTGAAGTAGAGTTGAAAGAGGTCAAGCTAAGGGAAGGATACTACGTAATGGACCCTGAACAAGCCGTGGAAATGGTGGATGAGAACACCATCTGTGTTGCCGCTATCCTTGGTTCCACACTAAATGGAGAATTCGAAGATGTAAAGCGCTTAAGTGATCTCCTTACTGAGAAGAACAAGGAAACTGGATGGGATACTCCAATTCATGTAGATGCAGCCAGTGGTGGCTTCATTGCACCATTTCTATACCCAGAGCTTGAGTGGGACTTCCGCTTGCCATTAGTGAAGAGCGTCAACGTCAGTGGCCACAAGTATGGTCTAGTCTACGCTGGGATCGGTTGGGTCATTTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATCTTCCACATTAACTATCTTGGGGCAGATCAACCCACCTTCACCCTCAACTTCTCTAAAGGTTCTAGTCAAGTTATTGCTCAATACTACCAGCTTATTCGCTTGGGTTATGAGGGATACAGGAATGTGATGGAAAACTGCAGAGACAACATGATGGTACTGAAAGAGGGGCTGGAGAAAACAGGGCGATTTGACATTGTATCCAAGGACGATGGGGTGCCTTTGGTGGCCTTCACTTTGAAAGACCATAGCCACTTTAACGAATTCCAAGTCTCAGACTTTCTAAAACGCTTTGGGTGGATAGTGCCAGCATATTCTATGCCCCCAGATGCCCAGCATGTAACCGTGCTCCGGGTTGTCATCAGAGAGGACTTCTCTCGAACATTTGCTGAGCGTCTTGTGATCGATATCCAAAAAGTGTTGCACGAGCTGGATCTGCTTCCAGCAAGGGTGGTCGAAAGCACCACTGTAACAGTTACTGCAGAAAATGTAGGCAACGGCAATTTGGTTCCAAAGAAGAGTGCCCTCGAGACCCAAAGGGAAATCACTACGGCATGGAAGAAATTCGTCTCTGACAGGAAGAAGATGAATGACAAGATGAACTGTGTTTGTTAG 1689 0.4742 MFKHFGHPRSDYDFSIETMLSFPSLEAASSPLTPFNSPPPPLLLSNYSLLFLISLFFAMVLSKTSSHTDVSIHSTFASRYVRTSLPRFKMAEHSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQESEPAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEQAVEMVDENTICVAAILGSTLNGEFEDVKRLSDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSVNVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMMVLKEGLEKTGRFDIVSKDDGVPLVAFTLKDHSHFNEFQVSDFLKRFGWIVPAYSMPPDAQHVTVLRVVIREDFSRTFAERLVIDIQKVLHELDLLPARVVESTTVTVTAENVGNGNLVPKKSALETQREITTAWKKFVSDRKKMNDKMNCVC 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0553 562 Gene3D - 59 123 - -
Glsi08g0553 562 FunFam Glutamate decarboxylase 59 123 - -
Glsi08g0553 562 Gene3D - 419 506 - -
Glsi08g0553 562 Pfam Pyridoxal-dependent decarboxylase conserved domain 94 439 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi08g0553 562 NCBIfam glutamate decarboxylase 74 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Glsi08g0553 562 PANTHER GLUTAMATE DECARBOXYLASE 59 553 IPR010107 GO:0004351|GO:0006536|GO:0030170
Glsi08g0553 562 FunFam Glutamate decarboxylase 124 418 - -
Glsi08g0553 562 SUPERFAMILY PLP-dependent transferases 74 502 IPR015424 -
Glsi08g0553 562 Gene3D - 124 418 IPR015421 GO:0003824
Glsi08g0553 562 FunFam Glutamate decarboxylase 419 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0553 Glsi-ChrGlsi08 4565404 4568754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0553 59 553 Calmodulin-binding Proteins AT5G17330 84.708 0.0 885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0553 08 4565404 4568754 Glsi08g0553 08 4565404 4568754 ECH