Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0548 ATGGAAGTGTCGGAATTATCCACCATTGAGCTGGTTGCAGCTATGGCTATTCAAGATCAACATGAAGTTTCTAGATCTCAAGTTTCTGGACTACATTCTGCTGCACGATTTCAACTAAATGATCAGTTTTCTTATGGGAAAGACTATGCTCCGAAGGTAAGGAAACCATATACTATCACCAAACAGAGAGAGAGATGGACGGATGACGAGCATAAGAAGTTCCTTGAAGCTTTAAAGTTATATGGCCGGGCATGGCGACGGATTGAAGAACATGTTGGCACAAAGACTGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACACTCCTGGTAACAGTACGAGCTCGATGAAGGAGTCCATTGAAATTCCACCTCCACGACCGAAACGAAAGCCAGTGCATCCTTACCCTCGTAAGCTGGTAGAGATGATCCCTACAAAAGAAATTCTCAATCCGGTGCAGCCAGTGAGGTCTAATTCTCCGAAGTCATCAGAATTTGATCAAGAAAACCAATCTCCCAAATCAGTGTTATCTGCAGTTGGTTCAGACCCACTTGGTTCCTCTGGTCCAGATACACCAAATGGAAGTTTATCCCCAGTCTCATCATCCAAATCATTATCTGAGGAAGATGGGTCTCCACCACCAGCTGGACCAAATGCTGATTTATCTCTTGATAAGCAATATCTTAGGAAATTCAAGCTTTTCCCCAAAGGAAGTGTTTCTACCAAAGAAGACGCAGCAGAAGAATCATCTGGTCGGATTCTTAAACTTTTTGGGACGACTCTTGTAGTAACAGATATCTGCAGATCATCATCTCCAACAATGGAGGCATGTAAACAGTTACCTTTAGGCACACAAGAGGAAAAATCTTTGCAAACACCACAGAAGAACTTGGTGCCAATGGAATCATTCTTAGTGAATGTGGAATGCTGTCGGACTATTAAGCCCAATGGAGCACAAGGTCCCGCTACTTTTGCTCCTTGGTGGGCTCTTTCCCATAATAGACCATTCATGCCATTGCACAAGGAGAACGAACCCGAGAGTAAAAATCTAAACTCTAATATTGGGGAAATTAAAGTTCAAAAGGAAGGATCTTGGACTTGTTCAAACACTAGCACAATAAATGGTGGGGAGAATGATGAAAAATCGGATGGTCAAGCCAAAAGTCATGTGCATTGCTTTAGCAAGGATGAAAAATTGGACCTTTTTGGCCCCACGACACCCAGTGAAACAACAACCATATCTGAGATAAGGGGGATGCCTAAAATCAGTGCGAAAGGGTTTGTGCCATATAAAAGATGCACTGCAGAAAGGAAATCAGAAAACCAGTCCTTACCAGTAATACCAGAAGAGAGGGAAGGGCAACGCATTCGCCTTTCATTATAA 1404 0.4274 MEVSELSTIELVAAMAIQDQHEVSRSQVSGLHSAARFQLNDQFSYGKDYAPKVRKPYTITKQRERWTDDEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDTPGNSTSSMKESIEIPPPRPKRKPVHPYPRKLVEMIPTKEILNPVQPVRSNSPKSSEFDQENQSPKSVLSAVGSDPLGSSGPDTPNGSLSPVSSSKSLSEEDGSPPPAGPNADLSLDKQYLRKFKLFPKGSVSTKEDAAEESSGRILKLFGTTLVVTDICRSSSPTMEACKQLPLGTQEEKSLQTPQKNLVPMESFLVNVECCRTIKPNGAQGPATFAPWWALSHNRPFMPLHKENEPESKNLNSNIGEIKVQKEGSWTCSNTSTINGGENDEKSDGQAKSHVHCFSKDEKLDLFGPTTPSETTTISEIRGMPKISAKGFVPYKRCTAERKSENQSLPVIPEEREGQRIRLSL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0548 467 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Glsi08g0548 467 SUPERFAMILY Homeodomain-like 57 110 IPR009057 -
Glsi08g0548 467 CDD SANT 65 108 IPR001005 -
Glsi08g0548 467 MobiDBLite consensus disorder prediction 112 228 - -
Glsi08g0548 467 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Glsi08g0548 467 MobiDBLite consensus disorder prediction 442 467 - -
Glsi08g0548 467 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Glsi08g0548 467 PANTHER SWI/SNF COMPLEX-RELATED 36 302 - -
Glsi08g0548 467 Gene3D - 65 111 - -
Glsi08g0548 467 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Glsi08g0548 467 MobiDBLite consensus disorder prediction 158 215 - -
Glsi08g0548 467 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Glsi08g0548 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Glsi08g0548 467 SMART sant 62 110 IPR001005 -
Glsi08g0548 467 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0548 Glsi-ChrGlsi08 4538691 4542199 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi08g0548 Myb_DNA-binding 3.3e-13 CL0123