Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0545 ATGACAATGGGCGAAGAGTCCTTTGACAGAGCTGTTGAACAGGCAATTGTGTCTATAAAGAAGGGTGCATACTTACTGAAGTGTGGACGTAGAGGAAAGCCCAAGCTCTGCCCTTTTAGACTTTCTCCGGATGAGAAAATTTTGATTTGGTATTCTGGGCAGCAGGAAAAGCATTTGCAATTGAGTGCTGTCACAAAAATTATTCAAGAGCAGGGAAATATAAGGTCCCAGAGGCAACGCCAACCTGAAAAGGAGTACCATACATTTTCACTAATTTATGCTAATGGTGAACGGTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTAGTGGGTTTGAGAGCTGTGATATCTAGGTTCCAGCATCCAAGACCTCTAAGTAGTTCAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAATTTTCCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGCTGAATTTACTCAGGTACACAGCTTATGTGCAAGTCCTTCTTTGTCACTTTCAGAAAGGCGCTTTTCTGATGGCTTAACTTATGCTTCCAATAGCTTTTATTCATCAAAGGCTTTCCTATGCAATACTCAAAGGGTAACAGATATTTCAGTCCCAAATTCACCATGTATCGATCCAGATTTTCTTAATAAGAGTGGACCAACATATGCTGGCATAGAGCATGAGAAGAATGCGCCAGATAGGTGTCTGCTGCCTCCTACCTCCCCACATGTAGGAAACAGCAATGTTTTGAAGGATGTCATGGTCTGGGGTGGAGGAATTGGGGGGATTGTAGGAAATGGTAATAACAGGTTTGTCAATCAGCACAATATTCATGCTGTGTTACCGAAGTTACTGGATTCCACCATGATGTTGGATGTACAAAATATAGCTTTAGGAGGAAATCATGCTGCCTTAGTCACAAAACAAGGGGAGGTGTTCTGCTGGGGTCAAGGGAAGGGGGGGAGGTTGGGGCACAAAATTGACGTTGATGTGAGCTCCCCCAAAATTGTTGATTCTCTTAATGGCATCCATATAAAATATGCTACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACGTGGGGGAACCATGGTGGTTGTACAGATTCTTCTGGTTATGGGAGAAATAGAAGTCAGTGGATAATACATAAACTTTCTGGACATTTAGATGGTATTCGTATTTCAAATGTTGCTTGTGGGGAATGGCATACAGCAATTATCTCTTGCTGTGGAAAACTATTTACGTATGGAGATGGTACCTTTGGAGTTCTTGGGCATGGGAATCTTCAGAGCATTTCTCAACCAAAAGAAGTTGAGTCCCTTAGAAGTCTACGAGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTAGAAGTCACAGTTGGTCATTTGAAGTATAATGCTGCTTGTGGTCAGCTGTTTACTTGGGGCGATGGAGACAAAGGGCGACTTGGTCATGCTGATAATGGAAGAAAGCTTTTACCAACATGTGTTGCACAACTTGTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACCGTAGCACTTACTAATTTGGGTAAAGTTTTTACAATGGGAAGTCCAGTGCATGGACAGCTAGGAAACTCACAAGCCAAGGATAACACAGTGACTATTGTTGAAGGACAGCTGAAACAGGAGTTTGTGAAAGGGATATCATCAGGTTCTTACCATGTGGCTGTTTTGACGTCTGCCGGGAGTGTCTATACATGGGGCAAGGGTGTAAATGGGCAGCTAGGATTGGGTGATACAGAAGATAGATACTCCCCTTCTTTTGTTAAGGCTCTAAAAGACAGGCAGGTAGAGAGTATCACTTGTGGGTCATGCTTCACAGCAGCAATCTGTTTACACAAACCTGTTTCTATTAGTGACCAGTCAGCTTGTAGCGGTTGTAAGCTTCCATTTGGGTTCAGAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTCTCTTCTGTCATACATGCAGTACCAAAAAAGTTACAAATGCATCTCTAGCACCAAATAGGAGCAAGGCTTCTCGGGTTTGTGATCAGTGCTTTGATAAATGGCAAGGAACTACACACTCAGCTATGGAATCCAGGTTGAGAAATTACAACACTCAGCAGCTACTGAAGCATCAGAATAAATTTCCTGATCTGACAGAAGATAGAGGAGAAAGAACTGTGACACATGGTCCTCTGTTGTCTCTCAGTCAGTCATGTTACAGGAAAAGCACGCCTAGTGGAAGGAAGGACTGGAAAAGTCAACAAGAAAGCCCGGAGAATTTAGAAAATATTTCTTCTCTGTTGGGTGGATTGCCACAATGGGGACAAGTTCCATGCCCTGCTCTATTTAAAACAAATTGTACAGAAAATTCTTTTGTGCACGTTTCTTCATCCAAAAATAAATTAGCTTCTGTTACTCCATTGAATTTAGAATCTACAGTGTCCAGCATGTCTATTGCAGAGAAAGATATACCAGAGTCTGATAAATTGCTCATGGAAGTTCGGAAGCTGAGATATAAGGCTAGGAGCCTTGAAGACCAATGCGAGCTCAAAGACCATAGAATACGAGAATGTCATAAAAAAATTGAGCAGAGTATGCTCTTGGCGAGGGAGGAAGCTGCAAAGTGTAAGGCAGCGAAAGAGGTCATAAAAGTGTTGGCCTTAAAACTTCATACAATATCAGGAAACGCCGATTCTGGACAAGAAGGAAAGGTCGTGGAACATGAATGTCTGCCTGATCCTACATCGACACAGAGAGATATCCATACTCCAAAAGATTGCAACCTGGACAGTCTATCTAGTTCCCCTATAGTATTCTCTAATACATTAAAATCCAAATTTGGGAGGCTCCAAAGTCATAAATCATTGCAAGATTCTCACTTTACCGGAAAGCAATCTCAACAAGACAGCACCAAGGTATCAAAGGTTGAATGGGTAGAACAGTATGATCCCGGAGTGTACCTCACATTTACAACCTTGCCATGTGGGCAAAAGAGCCTCAAGCGAGTCAGATTTAGCCGGAAACGATTCTCTGAAAAAGAAGCTGAGCGATGGTGGGAAGAGAATCAAACCACTGTCTACCAAAAGTATGAAATTGAAGGATATATGAATACAAGCCAAAATCCTTCTTGCATAGAAAAGGCGGGAGATGTAACCACTCATGTATTGCCACGTGGAGAGGAGGTTAGGTCAGATCGATATAAAGAGATGGCATCAGTTTCGTTGCCTCCTGGTTTCAGGTTCCACCCTACGGATGAAGAACTGGTTGCTTATTATCTCAAAAGAAAGATCAACGGCCGTAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTTTACAAGTGCGAACCCTGGGACTTGCCAGGAAAATCATTGTTACCAGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGTGATAGGAAGTACCCAAATGGTTCGAGAACGAACCGTGCAACCAAATCTGGATATTGGAAAGCCACAGGGAAAGATAGGAAAGTGAACTCCCAGTCTCGTGCTGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGTAGAGCACCCCATGGTTCTCGCACCAACTGGGTTATGCATGAGTATCGTCTTGACGAGAGGGAATGCGAAACTGCTTCTGGGTTGCAGGATGCATATGCTCTTTGCCGAATATTCAAGAAGACTACTGTGATTACTGCCAAAATTGGAGAGCACTACGTTACCAGCAGCCATGCAAATCAAATGGCTAGTGATCAGTCATCTAGCATTGAACTATACTCTGAGGGAAGAGGCGAAGATTTAGAGAGCTCAAATTATTTGATGCCTCTGGATAATTGCTCACCCTCCTTAGCAAATGGGACTTCTTCCCTCAATATCAACAGTGGAGCAAGAGATCATGGAAAATGGTCACAGTTCGTATCAGAAGACCCATTCACTCTTCCAAATTCTTCTTCATTAGTTCCCAATTATGGAGCCATACCATACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAGCATAGGTTTGCAATGCCTCCATTGGAAGTGGAGGACTTTCCTCAAGCGGGAATGGGTGGGAGCAGAAATGAAACGGATATCTTACAGGAAATTCTCTCAGTTGCTCATGCTTCTCAGGAACTGATAAACCAGTCCAACTATTCACAGTCATTAAATGGAAATGAAAACTATGCTCCTCAACAAGAAGATGACTTCACTTTCATGTTTGGCAGAGATAGTACTAATTACAACCTGCACCATGTCAATGATTTGAGCTCTATAAGATATGTTGACAGAAGCTCCTGGGCAGATCCAAACACTAGGTCAATAGAGATTGGGGATCTCGATGATGAATTCAAAGCAGACAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAAGGATTTAGAAAAGAGCTTCATGGAAGAGCAAAAGATTGTTCCAATTGATGATATTTCAAGTTTTCAAGCTAACAGGGAAGGGAATGATCAGCTGGTGCAAGCAGAATGTGAGCAACACAATGACGTAAATGAGTACTCATTGGGGTTTATCAACGACGATGACCTTAATGACAACTTCATAGATGATTATTCAAGTTCTCCAAGCTTCGATGTGGTTGAGGAAGTAAAAGTCAGCCATGGAATGTTTGTGTCAACGCGTCAAGTATCTGAGACATTCTTTCACCAAATAGTTCCTTCACAGACCATGAAGGTTCACCTCAATCCAGTTATGCCAAGCAATCATTGTACAGAAAATTCAGAGACAGTACTAATGAGATCACCAGAAAACCAAGACTGTTCTTTCTCTAGAAAATTGAAGGACTATGTGATGGGGAAGATGATAAAGCCATCAAAGACAATAGCAAGTGCCATTGTGTTCATCTTTGCACTTGTGATGATGCATTTGGAGGAACAAGTGGAAAGTTGGAAAATTTCAGAGCCAGAGGATGATGAGAAGGAGAGATGTTGTTGCTGTAGTGCTAATTATTACAGCATGAAGATCAGAATGAGAACATCAGGTGAGAAAATCAAATGGGATGAGAAAGAAAAGGTTGGGATTGTTGGCATCAAAAGTGGAAAAGGATCATTCAGTGTGGTGTTGAAGAAGATAGGCATTTTTCTTTCCATATCGTTAGCTCTTTGTACCATGTGGGCTAACCACATCATAATTAACCCTTGA 5253 0.4217 MTMGEESFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDEKILIWYSGQQEKHLQLSAVTKIIQEQGNIRSQRQRQPEKEYHTFSLIYANGERSLDLICKDKAQAASWLVGLRAVISRFQHPRPLSSSRSCKGVQSCVSSPAGIFRRKKNLGLLEDTAEFTQVHSLCASPSLSLSERRFSDGLTYASNSFYSSKAFLCNTQRVTDISVPNSPCIDPDFLNKSGPTYAGIEHEKNAPDRCLLPPTSPHVGNSNVLKDVMVWGGGIGGIVGNGNNRFVNQHNIHAVLPKLLDSTMMLDVQNIALGGNHAALVTKQGEVFCWGQGKGGRLGHKIDVDVSSPKIVDSLNGIHIKYATCGEYHTCALTDSGEVYTWGNHGGCTDSSGYGRNRSQWIIHKLSGHLDGIRISNVACGEWHTAIISCCGKLFTYGDGTFGVLGHGNLQSISQPKEVESLRSLRVRSVACGSWHTAAIVEVTVGHLKYNAACGQLFTWGDGDKGRLGHADNGRKLLPTCVAQLVDYDFVQVSCGRMLTVALTNLGKVFTMGSPVHGQLGNSQAKDNTVTIVEGQLKQEFVKGISSGSYHVAVLTSAGSVYTWGKGVNGQLGLGDTEDRYSPSFVKALKDRQVESITCGSCFTAAICLHKPVSISDQSACSGCKLPFGFRRKKHNCYNCGLLFCHTCSTKKVTNASLAPNRSKASRVCDQCFDKWQGTTHSAMESRLRNYNTQQLLKHQNKFPDLTEDRGERTVTHGPLLSLSQSCYRKSTPSGRKDWKSQQESPENLENISSLLGGLPQWGQVPCPALFKTNCTENSFVHVSSSKNKLASVTPLNLESTVSSMSIAEKDIPESDKLLMEVRKLRYKARSLEDQCELKDHRIRECHKKIEQSMLLAREEAAKCKAAKEVIKVLALKLHTISGNADSGQEGKVVEHECLPDPTSTQRDIHTPKDCNLDSLSSSPIVFSNTLKSKFGRLQSHKSLQDSHFTGKQSQQDSTKVSKVEWVEQYDPGVYLTFTTLPCGQKSLKRVRFSRKRFSEKEAERWWEENQTTVYQKYEIEGYMNTSQNPSCIEKAGDVTTHVLPRGEEVRSDRYKEMASVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETASGLQDAYALCRIFKKTTVITAKIGEHYVTSSHANQMASDQSSSIELYSEGRGEDLESSNYLMPLDNCSPSLANGTSSLNINSGARDHGKWSQFVSEDPFTLPNSSSLVPNYGAIPYPPSKVDIALECARMQHRFAMPPLEVEDFPQAGMGGSRNETDILQEILSVAHASQELINQSNYSQSLNGNENYAPQQEDDFTFMFGRDSTNYNLHHVNDLSSIRYVDRSSWADPNTRSIEIGDLDDEFKADRMVENLRWVGMSSKDLEKSFMEEQKIVPIDDISSFQANREGNDQLVQAECEQHNDVNEYSLGFINDDDLNDNFIDDYSSSPSFDVVEEVKVSHGMFVSTRQVSETFFHQIVPSQTMKVHLNPVMPSNHCTENSETVLMRSPENQDCSFSRKLKDYVMGKMIKPSKTIASAIVFIFALVMMHLEEQVESWKISEPEDDEKERCCCCSANYYSMKIRMRTSGEKIKWDEKEKVGIVGIKSGKGSFSVVLKKIGIFLSISLALCTMWANHIIINP 1750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0545 1750 Coils Coil 849 869 - -
Glsi08g0545 1750 Gene3D - 11 127 IPR011993 -
Glsi08g0545 1750 SMART fyve_4 643 712 IPR000306 GO:0046872
Glsi08g0545 1750 SUPERFAMILY FYVE/PHD zinc finger 649 727 IPR011011 -
Glsi08g0545 1750 Gene3D - 249 383 IPR009091 -
Glsi08g0545 1750 Gene3D - 384 479 IPR009091 -
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 644 IPR000408 -
Glsi08g0545 1750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 711 IPR013083 -
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Glsi08g0545 1750 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1052 IPR013591 -
Glsi08g0545 1750 SUPERFAMILY RCC1/BLIP-II 260 645 IPR009091 -
Glsi08g0545 1750 CDD PH_PLC_plant-like 10 122 - -
Glsi08g0545 1750 Pfam Pleckstrin homology domain 13 119 IPR001849 -
Glsi08g0545 1750 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 489 540 IPR000408 -
Glsi08g0545 1750 Pfam No apical meristem (NAM) protein 1098 1224 IPR003441 GO:0003677|GO:0006355
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 318 IPR000408 -
Glsi08g0545 1750 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 649 711 IPR017455 -
Glsi08g0545 1750 SUPERFAMILY PH domain-like 11 121 - -
Glsi08g0545 1750 SUPERFAMILY NAC domain 1092 1247 IPR036093 GO:0003677|GO:0006355
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 412 428 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 530 548 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 428 442 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Glsi08g0545 1750 PRINTS Chromosome condensation regulator RCC1 signature 588 609 IPR000408 -
Glsi08g0545 1750 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 913 - -
Glsi08g0545 1750 FunFam Nac domain-containing protein 86 1106 1250 - -
Glsi08g0545 1750 ProSiteProfiles NAC domain profile. 1097 1247 IPR003441 GO:0003677|GO:0006355
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 425 IPR000408 -
Glsi08g0545 1750 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 464 474 IPR000408 -
Glsi08g0545 1750 Gene3D - 480 651 IPR009091 -
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 477 IPR000408 -
Glsi08g0545 1750 Pfam Regulator of chromosome condensation (RCC1) repeat 593 641 IPR000408 -
Glsi08g0545 1750 Pfam Regulator of chromosome condensation (RCC1) repeat 489 537 IPR000408 -
Glsi08g0545 1750 Pfam Regulator of chromosome condensation (RCC1) repeat 319 367 IPR000408 -
Glsi08g0545 1750 Pfam Regulator of chromosome condensation (RCC1) repeat 426 474 IPR000408 -
Glsi08g0545 1750 Pfam FYVE zinc finger 650 710 IPR000306 GO:0046872
Glsi08g0545 1750 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Glsi08g0545 1750 Gene3D NAC domain 1106 1251 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0545 Glsi-ChrGlsi08 4515421 4529259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0545 1092 1741 NAC Transcription Factor Family AT1G65910 45.740 2.97e-156 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g0545 NAM 1.8e-40 No_clan