Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0542 ATGGAAGAACAACAACGAAGCCTAGAAAGCTTCTTGAGGTGGGCGGCAGAGCTCGGAATATCAGACGCAGCAAGCACCAATCAGCCTCAAGATTCTCTTTCCTGTTTGGGTTATTCACTCTGTGTCTCTCATTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGCGAAATCTTAGGAGGGGAGAATTAATCCTCAGAGTGCCAAAATCTGCCTTAATGACAACAGAGAGCGTCATGGAAGATAAGAAGTTGTCCCTTGCTGTTAATAAGCACCCTTATCTCACCTCTTCCCAGATATTGGTCGCTTGCTTATTGTATGAAATGGCCAAAGGAAAGTCTTCAAAATGGCATACTTACCTCATGCATTTGCCGCATAACTATGACAATCTAGCCACGTTTGGTGAATTCGAGAAACAAGCTCTTCAAGTGGATGAGGCTCGGTGGGTCACGGAGAAGGCTGTATTAAAAGCCAAATCAGAGTGGAAAGAAGCTAATGCTTTGATGGAAGAACTCAAGCTTAAGTCCCAATTTTTAACGTTTAAGGCATGGCTTTGGGCTACTGCGACGATATCCTCTCGGACGTTGCACATCCCATGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAAGGAGTCACCTGGTCCTGAAGATGTAGAGAATCTGCTATCTAACTCTTCCATCCATGTCACTACTGTGTCCAGTGTAGACAATTCTATAATGATAGATGCAGCAGAACAGCCTGATTCTCATTTTCAGAGATTAACAGATGGTGGGTTTGAGGAAGATGTTAATGCTTATTGCTTTTATGCAAGGGAAAATTACAAGCAAGGAGAGCAGGTTCTATTATGCTATGGAATGTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCTTACAAGAAAACCCAAATGAAAAAATTTTTATTCCTCTAGAACCTGCTGTATATTCTTCCAGTTCATGGTCTAAAGAGTCACTCTACATCCATCATAATGGGAAGCCTTCCTTTGCGTTACTGTCTGCTTTGCGGTTGTGGGCAACCCCTAAAAATAAGCGGAGGTCTGTTGGACATCTTGCATATTCTGGTTCTCAACTGTCTGCAGACAATGAAATTTTTGTGATGAAATGGCTGTCAAAGACTTGCAATGCTGCTTTAAAGGGTTTGCCAACATCAATTGATGACGACTTGTTACTCCTTAATGCAATGGATAATAGTCAAGATTTTTGTACTTTCATGGAGATCACAAAACTATTGTCTTCTAGGGATGAGATTTGTGCCTTTTTGGAATCTAAGAATCTGCAGCATGGACATGGTTTTACCGGTATACATGTATCTAGGAAAGCTAAGAGGTCCATGGACAGGTGGAAATTGGCTGTCCAATGGAGGGTCAGGTATAAGAATGTCCTTGTGAATTGTATCTCTTATTGCAATGAAATACTTGACTCTTTTGACATAACGCAATGA 1497 0.4195 MEEQQRSLESFLRWAAELGISDAASTNQPQDSLSCLGYSLCVSHFPHSGGRGLGAVRNLRRGELILRVPKSALMTTESVMEDKKLSLAVNKHPYLTSSQILVACLLYEMAKGKSSKWHTYLMHLPHNYDNLATFGEFEKQALQVDEARWVTEKAVLKAKSEWKEANALMEELKLKSQFLTFKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGKESPGPEDVENLLSNSSIHVTTVSSVDNSIMIDAAEQPDSHFQRLTDGGFEEDVNAYCFYARENYKQGEQVLLCYGMYTNLELLEHYGFLLQENPNEKIFIPLEPAVYSSSSWSKESLYIHHNGKPSFALLSALRLWATPKNKRRSVGHLAYSGSQLSADNEIFVMKWLSKTCNAALKGLPTSIDDDLLLLNAMDNSQDFCTFMEITKLLSSRDEICAFLESKNLQHGHGFTGIHVSRKAKRSMDRWKLAVQWRVRYKNVLVNCISYCNEILDSFDITQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0542 498 Pfam SET domain 50 295 IPR001214 GO:0005515
Glsi08g0542 498 CDD SET_LSMT 39 309 - -
Glsi08g0542 498 Pfam Rubisco LSMT substrate-binding 343 480 IPR015353 -
Glsi08g0542 498 Gene3D set domain protein methyltransferase, domain 1 4 309 - -
Glsi08g0542 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 424 - -
Glsi08g0542 498 FunFam Protein SET DOMAIN GROUP 40 8 309 - -
Glsi08g0542 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 421 IPR036464 -
Glsi08g0542 498 ProSiteProfiles SET domain profile. 38 295 IPR001214 GO:0005515
Glsi08g0542 498 Gene3D - 325 497 IPR036464 -
Glsi08g0542 498 SUPERFAMILY SET domain 6 313 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0542 Glsi-ChrGlsi08 4496275 4500265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0542 6 333 NAC Transcription Factor Family AT3G56570 22.843 4.92e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi08g0542 SET 6.5e-10 No_clan