Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0523 ATGACCACTGAAGGATGGTGGCACATGCCGGCTGTCACATCAGTCTCCAACGTACGTTCGAGATTTTCCAGTACGGAAAATCCAACGGCTCAGAAAAGAAAAGTAAAGCTTAATATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGAGAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCAGGTCCCCTGGTGTCCCTACCAACCGCGGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCCGCCACAACTAACAGAGAAGTTGATGGGCACATACCCAATTATCCGAGCTTGCCACCCCAGTTAATTTGTCAGCTTCATAATGTTACTATGCATGCTGATGTCGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTTTGGAATTGGGCATTCCGAGTAGGCAGCCCTCAAATTATTTTTGCAAGACATTAACCGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACTGCAACCACCAGCACAAGAACTAATTGCTAGGGACCTCCACGATGTTGAGTGGAAGTTTAGACACATTTTTCGGGGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTTTTAGGAATACGTCGTGCCAATCGACCACAAACTGTGATGCCATCATCAGTTCTTTCGACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTATTCTATAATCCAAGGGCTAGTCCATGTGAGTTTGTCATACCACTTTCAAAGTATATGAAAGCTGTGTACCATACACGTGTTTCAGTTGGCATGCGTTTCAGGATGCTTTTTGAGACTGAGGAGTCAAGTGTACGCAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGTTGGCCAAACTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACAGCAGGAGATAGACAGCCACGGGTATCATTGTGGGAAATTGAGCCTTTGACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCCCCTCATCTCTGCATGATGGCAGAGATGAAGCAACCAATGGGCTAATGTGGCTGAGAGGTGGACCCGGAGATCAAGCTCTCAACTCTCTTAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTAGGAAATGACCATAATCAACAGTATCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGGAGTGGTGATCTCTTGCGTCAACAAATGATGAATTTTCAACAACCAATCCCTTATCTTCAACAATCAGGAAACCATAATTCTCTGCAACTTCAGCAGCAACAAGCAATTCAGCAATCATTGTGTTCTAGTATCCTGCAGCCACAAGCCAATGTGTTGACAGAGAACCTGTCTCAGCACATCCTTCACAAACCACATAACAATCAAGAAGACCAAATACAGCAGCAGCAAAGTACTTACCATGATACGTTTTTGATTCAGGGTGATCAGATCCAACAGAGGCAACACCCGAATGTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATAAAGTTCTCTGCATCAGTTTCCCCTGGACAGAACACGCTCAGTTCACTTTGTCCTGAAGGGAGTGGCAATCTTTTGAACTTATCCAGAACTAGTCAGTCCATGCTGACTGAACAATTACCCCAACAGTCATGGACTTCAAAGTATGCACCCATGCAAGTCAGTGCCTTTGGAAACTCGATGTCACACACACAATATACTGGAAAAGATTCTGCAATGGTGCCACCTCATTGTAATTCGGATACCCAAAATACTATCTTTGGTGTTAATATTGATTCATCTGGACTTCTGCTCCCCACTACTGTCCCTGGTTTTACGACTTCCTCAGTAGGTACTGATGCATCAACAATGCCATTGGGGGAGTCTAGTTTCCAGGGTCCTCTATATGCTTGCATGCAAGATTCGTCAGAGTTGCTGCAAAGTTCAGGGCAAGTTGATCCTCAAAATCAGACTCAGACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGTTCACTTGACATCACCCGGTTCAGCAGCTATCATGAACTGAGGGAGGAGTTGGCCCAGATGTTTGGAATTGAGAGGAAGTTAGAAGAACCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGATGATCCTTGGGAATCATTCGTCAATAATGTTTGGTATATCAAGATACTTTCACCTGAAGATATTCAGAAAATGGGTGAGGAAGCGGTGGAATCCCATGGTCCAAATGCAGGACAAAGGCTGAATAGCAGCAGTGCAGAATCTCGGGACCTTGTTTCTGGGTTTCCATCAATGGGATCGCTTGAATACTGA 2637 0.4532 MTTEGWWHMPAVTSVSNVRSRFSSTENPTAQKRKVKLNMKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPLELGIPSRQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPCEFVIPLSKYMKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSLHDGRDEATNGLMWLRGGPGDQALNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPIPYLQQSGNHNSLQLQQQQAIQQSLCSSILQPQANVLTENLSQHILHKPHNNQEDQIQQQQSTYHDTFLIQGDQIQQRQHPNVPSPSYSKPDFLDSSIKFSASVSPGQNTLSSLCPEGSGNLLNLSRTSQSMLTEQLPQQSWTSKYAPMQVSAFGNSMSHTQYTGKDSAMVPPHCNSDTQNTIFGVNIDSSGLLLPTTVPGFTTSSVGTDASTMPLGESSFQGPLYACMQDSSELLQSSGQVDPQNQTQTFVKVYKSGSVGRSLDITRFSSYHELREELAQMFGIERKLEEPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAVESHGPNAGQRLNSSSAESRDLVSGFPSMGSLEY 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0523 878 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Glsi08g0523 878 Pfam Auxin response factor 291 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi08g0523 878 SUPERFAMILY DNA-binding pseudobarrel domain 149 294 IPR015300 -
Glsi08g0523 878 SUPERFAMILY CAD & PB1 domains 745 826 - -
Glsi08g0523 878 Gene3D - 748 841 - -
Glsi08g0523 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 841 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi08g0523 878 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Glsi08g0523 878 CDD B3_DNA 164 265 IPR003340 GO:0003677
Glsi08g0523 878 MobiDBLite consensus disorder prediction 851 866 - -
Glsi08g0523 878 MobiDBLite consensus disorder prediction 844 878 - -
Glsi08g0523 878 SMART B3_2 165 267 IPR003340 GO:0003677
Glsi08g0523 878 FunFam Auxin response factor 747 841 - -
Glsi08g0523 878 Gene3D - 163 266 IPR015300 -
Glsi08g0523 878 Gene3D - 329 401 - -
Glsi08g0523 878 ProSiteProfiles PB1 domain profile. 752 836 IPR000270 GO:0005515
Glsi08g0523 878 FunFam Auxin response factor 163 267 - -
Glsi08g0523 878 Pfam AUX/IAA family 746 836 IPR033389 -
Glsi08g0523 878 FunFam Auxin response factor 329 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0523 Glsi-ChrGlsi08 4341139 4350271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0523 135 849 B3 DNA Binding Superfamily AT5G37020 67.631 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi08g0523 AUX_IAA 5.6e-08 CL0072