Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0510 ATGGAGTCGGTTCTCAAGCAATACTTTGGGTTTTCTGAGTTTCGGCCTTATCAGAAGGATGTTATCGAGAAAATTATCGAGAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTTCCTCCCTTGGTTGTTAGAAGGACTGGGATAGTTGTCAGCCCTCTTATATCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCCGAGTATCTTGGAAGTGCTCAGACAGATCCCACGGTCCAGACTAAAGCTGAGAGTGGGCAATTTGATATTCTGTTCATGACTCCGGAGAAGGCTTGCTTAATTCCTACCAGCTTCTGGTTGAACTTGCTAAAGGCAGGAATTTGTCTTTTTGCTGTTGATGAGGCACATTGCATATCAGAGTGGGGCCATGATTTTAGGGTGGAATACAAGCAGTTGGACAAGTTACGTGGTGTTCTATCAGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGATATCGTCAGTTCCCTGAAGATGCATAATCCTTATGTTTCAGTTGGTTCATTTGATCGCACTAATCTTTTCTATGGCGTCAAGGCTTTTAACCACAGTCAACATTTTGTGGATGGGCTTGTGCGAGATATTTCAAAAAAAGTTGCTAGTGGTGGTTCAACTATAATCTACTGCACCACAATAAAAGATGTAGAGCAGATTTCCAAGTCACTTTTGGAAGCAGGTGTTGTAGCTGGGACATACCATGGGCAAATGAATAAAAAAGCTCGTGAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTTGCCACTATTGCTTTTGGGATGGGTATAGATAAGCCTGACATAAGACAGGTGATACACTATGGTTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTATAGCTTCTGTCTGTTGGCTTTACTACACAAGAAACGACTTTGCAAAGGGCAGCTTTTATTGTGGAGAATTACAAACAGAAAAGCAGAGAAGAGCTGTCATGGAGTCATTAATGGCTGCTGAACGCTATTGTTTGTTGGCAACTTGCAGAAGAAAATTCTTACTTGAATACTTTGGGGAAAAAGTTTCAGCTGATAGATGTGGAAATTGTGATAACTGCACTGTCTCAAAGAAGGAGCGTGACATGTCAAGAGAAGTATTTCTTCTAATGGCTTGCATTCAGTCATGCAAGGGTAAATGGGGCCTTAATATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCCCTTCACGGTCTTGGGAAAGCTTACCCGTCAAATTGGTGGAAAGCCCTTGGACATCAACTAATTTCTAATGGTTACTTGAAGGAGACTGTTAATGATATTTACAGAACTATAAGTGTCAGCTCAAAAGGGGAGCAATTTTTGGCCTCTGCTAGACCAGATTATCAACCACCCTTAGTTTTGTCAGTGACTACTGAAATGGTTGATGAAGAAGAAAATAGGTGTGCAGCAGAAGAATTCAAAATTTTAGCTACTTCAGAATCTGAGGGCTTTTCAGAGGCTGAGAGACAACTCAATCAAATGCTTTTGGAAGAGAGATTAAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATATGTGGTGATCAAACCATCAAGAAAATTGCACTGACAAGACCATCTACAAAAGCACGGCTAGCAAATATTGATGGTGTGAATCAGCACCTAGTAATGAAATATGGAGATCATTTTCTTCAAGTTATTCAACAATTGTCACATGGATTGAACCTTTCATTGGATGGGGAAGCAAGCTTGCAAACTGTCGCGGTGCCAGTAAGAAAAGTGTCTTCTACCAATGAATCAAGGAAGTTGACACCAGCAAAGTTTGAAGCCTGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCAATAAAAGAACAGACTGTTGCTGATTATCTTCTGGAAGCTGCCCAAGAAGGATTGCCTTTTGACTGGACTAGATTCTGTGAGATGGTTGGACTGACACATGCGATCATAACAGAAATTCAGGGTGCTATTTTAAAGGTTGGATCTTCAGAAAAATTGAAGCCTATAAAAAATGAATTACCTGAAGAGGTAAGTTATCTGCACATCAAGACTTATTTAACAATGCAAAACTGTGGAACATCTACTGAAGGCATTCAGCCTATGAAAAAAAGTGATCAAGAAATGCATGAGGAAACACCTGGAACTGCCAATGGTTACCAGGTTCAGAATCTTCCATTAGTCTGTGAGGAGGAACTCACAAAGAAACGCCAAAAAGTGAGTGAACCAGAGGAAGAAAATCCCATCAAATTGAAGGCAACAGAGAGTTCCCTAGTAGAGTGGCTGAAGAACCGTGAAGGGGTCAGTTAA 2493 0.4164 MESVLKQYFGFSEFRPYQKDVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVRRTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQTKAESGQFDILFMTPEKACLIPTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIVSSLKMHNPYVSVGSFDRTNLFYGVKAFNHSQHFVDGLVRDISKKVASGGSTIIYCTTIKDVEQISKSLLEAGVVAGTYHGQMNKKAREESHRLFVRDELQVMVATIAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRNDFAKGSFYCGELQTEKQRRAVMESLMAAERYCLLATCRRKFLLEYFGEKVSADRCGNCDNCTVSKKERDMSREVFLLMACIQSCKGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKAYPSNWWKALGHQLISNGYLKETVNDIYRTISVSSKGEQFLASARPDYQPPLVLSVTTEMVDEEENRCAAEEFKILATSESEGFSEAERQLNQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVMKYGDHFLQVIQQLSHGLNLSLDGEASLQTVAVPVRKVSSTNESRKLTPAKFEAWKMWHEDGLSIQMIANFPGRSAPIKEQTVADYLLEAAQEGLPFDWTRFCEMVGLTHAIITEIQGAILKVGSSEKLKPIKNELPEEVSYLHIKTYLTMQNCGTSTEGIQPMKKSDQEMHEETPGTANGYQVQNLPLVCEEELTKKRQKVSEPEEENPIKLKATESSLVEWLKNREGVS 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0510 830 NCBIfam RecQ family ATP-dependent DNA helicase 3 455 IPR004589 GO:0004386|GO:0006310
Glsi08g0510 830 Pfam Helicase conserved C-terminal domain 223 322 IPR001650 -
Glsi08g0510 830 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi08g0510 830 Pfam Helix-turn-helix domain 652 748 IPR029491 -
Glsi08g0510 830 Gene3D - 197 398 IPR027417 -
Glsi08g0510 830 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 217 368 IPR001650 -
Glsi08g0510 830 Gene3D - 399 525 IPR036388 -
Glsi08g0510 830 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Glsi08g0510 830 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Glsi08g0510 830 CDD SF2_C_RecQ 197 332 - -
Glsi08g0510 830 FunFam ATP-dependent DNA helicase 536 626 - -
Glsi08g0510 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 337 IPR027417 -
Glsi08g0510 830 SUPERFAMILY "Winged helix" DNA-binding domain 395 500 IPR036390 -
Glsi08g0510 830 Gene3D - 1 195 IPR027417 -
Glsi08g0510 830 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Glsi08g0510 830 SMART hrdc7 540 620 IPR002121 GO:0003676
Glsi08g0510 830 SMART ultradead3 10 207 IPR014001 -
Glsi08g0510 830 Pfam RQC domain 401 497 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi08g0510 830 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 685 - -
Glsi08g0510 830 Pfam RecQ zinc-binding 336 397 IPR032284 -
Glsi08g0510 830 CDD DEXHc_RecQ 2 196 - -
Glsi08g0510 830 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Glsi08g0510 830 MobiDBLite consensus disorder prediction 796 812 - -
Glsi08g0510 830 FunFam ATP-dependent DNA helicase 399 523 - -
Glsi08g0510 830 MobiDBLite consensus disorder prediction 796 817 - -
Glsi08g0510 830 SUPERFAMILY HRDC-like 539 613 IPR010997 GO:0000166|GO:0044237
Glsi08g0510 830 FunFam ATP-dependent DNA helicase 1 195 - -
Glsi08g0510 830 Gene3D HRDC domain 539 619 IPR044876 -
Glsi08g0510 830 SMART helicmild6 242 323 IPR001650 -
Glsi08g0510 830 FunFam ATP-dependent DNA helicase 197 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0510 Glsi-ChrGlsi08 4262949 4274273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0510 232 337 Eukaryotic Initiation Factors Gene Family AT3G19760 27.358 3.67e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0510 08 4262949 4274273 Glsi08g0510 08 4262949 4274273 ECH