Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0500 ATGAAAGTGATGGCAATCGTCATCGGCAACAACAATTCCTGCTCCATTTCTTGTGGCGACCTGGGTTGGCAGTATGAAGCTGTTTTCGGCTTGTGGTTGTGTTGCCATTTGCTAATGGTTGCTGCGCAGAATCCTGTCACTCACCCCACTGAAGTTGAAGCGTTGAAAACCATCAAGGAAAGTTTGATTGATCGGAATGGAAATCTGAGTAACTGGAATCGTGGAGACCCATGTACATCTAAGTGGACAGGGGTTTTGTGCTTCAATAAATCATCAACTGATGGCTACCTACATGTTCAACAATTGCAACTACTGAATTTGAACTTGTCTGGAACGTTGGCACCAGAGCTTGGCCTTTTATCTTATATGGAAATGATGAGCTTTATGTGGAACGACATAACTGGGAGTATACCAAAGGAAATTGGCAACATCAAAAGTTTGCGACTCTTGCTTCTGAGTGGAAATCAATTAACAGGTCGCCTGCCAGAAGAGCTTGGTGATCTTCCAAACCTGAACAGAATACAAATCGATCAAAACCATATAACAGGACCTGTACCTACGTCATTTGCAAACCTTAATAATACAAAGCACTTCCTTCTCGACAACAACAACTTATCTGGATATCTTCCTTCTGAGCTCTACCAGATGCCAAGTATACGTATAATTCAACTTGATAACAATAACTTTGGCGGGAATGCCATTCCAGATACTTATGGAAACATGTCAAAATTGTTGAAGTTCGATTTGTCAAACAACAAGCTTACTGAAACTATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTTACTTGGAAACAACTCATTGAATGGCAGTGTTCCTTCCACCATTTGGCAGAACAGGACTTCAAATGGAGCAGAAAGATTTTTCTTGGAGTTGCAAAATAATAATCTTACAAGCATATTAGGCAGTACTAATCTTCCTCCAAACGTAACACTCTGGCTTGAGGGAAATCCTCTATGTTCTAATAATGACACTCTAGTTCAGTTCTGTGGATCTGACAGCCCCAGTGACACTGACAACTTGGGTCCAACAAGCTCCAATGTTAGCTGTCCCAGTCAAGCATGCCCCCCTCCTTATGAATATTCTAAAACATCTCGTGTGGAGTGTTTCTGTGCAGCCCCATTACTCGTTCATTATCGGTTGAAAAGTCCTGGATTTTCAGATTTTCGTCCATACCTGAATGACTTTGAGGATTACCTGACTACTGATCTTAGTTTACTTATTAATCAGCTTGATATTGATTCCTATATGTGGGAAGAAGGACCTCGAATGAACATGAACTTGAAACTTTTTCCCGTATCTGTTGATAACGAAAGCTCTCGTCTTTTCAATGATAGTGAGGTTCAACGTATCAGAAACATGCTCAGAGAATGGACTATTTCTGGCAACGATTTTTTTGGACCTTATGAATTACTCAACTTTATTCTTTTGGATCCTTACAGAGATGGGATTGTCAACTCCCCAAGTTCAGGGATAAGCAAGGGTGCCTTGGCTGGCATAATCTTAGGGGCAATTGCTTGTGCAGTTACATTATCTGCAATTGTTACTGTTCTTATACTGAGAATACGCATCAGAGATTACCATGCGGTTTCAAAACGACATCTTTCATCTAAAATCTTAATACAAATTGATGGTGTGAGGAGCTTCACATATGGAGAAATGGCCTCGGCTACAAACAATTTTAGTGACTCCGCGCAGGCTGGCCAAGGTGGGTATGGAAAGGTATATAAAGGTATTCTTGATGATGGCACTGTTGTTGCCATAAAACGTGCTCAGGAGGGATCACTGCAAGGGCAGAGGGAGTTCCTTACAGAAATACAACTACTATCAAGGGTACATCATCGCAACCTTGTGTCTTTGGTTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGCCAAATGGCACGCTAAGGGATCATCTTACAGCTACTTCGAAAGAGCCTCTGAGCTTTGATATGAGATTGAGGATTGCCCTAGGGTCAGCTAAGGGTATTCTGTATCTACATACGGAAGCCAATCCTCCAATATTCCACCGAGATATCAAGGCCAGCAACATATTATTGGACTCTAAGTTCATAGCAAAAGTTGCTGATTTTGGACTTTCACGGCTTGCTCCAGTTGCAGATATGGAAGGAATTGTGCCAGCTCATGTATCTACAGTGGTAAAGGGAACACCGGGTTACCTTGATCCCGAGTACTTCTTGACTCATAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTCCTGGAGCTTTTGACAGGAAGGCCACCAATCTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATATCAATCTGGTACGATATTCTCGGTTATCGATGAACGTATGGGGTCTTATCCTTCGGAGTGCATGGAGAAATTTTGGACTCTGGCCCTTAAGTGTAGCCGAGATGAACCAGATGCACGGCCTCAAATGGCAGAAGTGGTACGAGAGATTGAAAACATAGGGTCTATGATGCCTGCATTCAATGCCAAGACCAAGATGCAAGAATCTATAACCAGCGATTCTGGAACGATACTCAGTCCATCATCTTCATCCTCTATTATCAAGACTCCATTTTTATCTGCAGATGTGTCTGGTAGTGACCTTGATAGTGGAGTGGTACCGACCATTAGGCCAAGATAG 2709 0.419 MKVMAIVIGNNNSCSISCGDLGWQYEAVFGLWLCCHLLMVAAQNPVTHPTEVEALKTIKESLIDRNGNLSNWNRGDPCTSKWTGVLCFNKSSTDGYLHVQQLQLLNLNLSGTLAPELGLLSYMEMMSFMWNDITGSIPKEIGNIKSLRLLLLSGNQLTGRLPEELGDLPNLNRIQIDQNHITGPVPTSFANLNNTKHFLLDNNNLSGYLPSELYQMPSIRIIQLDNNNFGGNAIPDTYGNMSKLLKFDLSNNKLTETIPSYFSGLPRLQKLLLGNNSLNGSVPSTIWQNRTSNGAERFFLELQNNNLTSILGSTNLPPNVTLWLEGNPLCSNNDTLVQFCGSDSPSDTDNLGPTSSNVSCPSQACPPPYEYSKTSRVECFCAAPLLVHYRLKSPGFSDFRPYLNDFEDYLTTDLSLLINQLDIDSYMWEEGPRMNMNLKLFPVSVDNESSRLFNDSEVQRIRNMLREWTISGNDFFGPYELLNFILLDPYRDGIVNSPSSGISKGALAGIILGAIACAVTLSAIVTVLILRIRIRDYHAVSKRHLSSKILIQIDGVRSFTYGEMASATNNFSDSAQAGQGGYGKVYKGILDDGTVVAIKRAQEGSLQGQREFLTEIQLLSRVHHRNLVSLVGYCDEEGEQMLVYEFMPNGTLRDHLTATSKEPLSFDMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSKFIAKVADFGLSRLAPVADMEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRPPISHGKNIVREVNVAYQSGTIFSVIDERMGSYPSECMEKFWTLALKCSRDEPDARPQMAEVVREIENIGSMMPAFNAKTKMQESITSDSGTILSPSSSSSIIKTPFLSADVSGSDLDSGVVPTIRPR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0500 902 Gene3D Ribonuclease Inhibitor 214 367 IPR032675 -
Glsi08g0500 902 FunFam Leucine-rich repeat protein kinase family protein 535 646 - -
Glsi08g0500 902 SUPERFAMILY Protein kinase-like (PK-like) 556 861 IPR011009 -
Glsi08g0500 902 Gene3D Ribonuclease Inhibitor 48 213 IPR032675 -
Glsi08g0500 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Glsi08g0500 902 SUPERFAMILY L domain-like 47 332 - -
Glsi08g0500 902 Pfam Protein tyrosine and serine/threonine kinase 576 839 IPR001245 GO:0004672|GO:0006468
Glsi08g0500 902 Gene3D Phosphorylase Kinase; domain 1 542 646 - -
Glsi08g0500 902 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 647 857 - -
Glsi08g0500 902 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 49 210 - -
Glsi08g0500 902 CDD STKc_IRAK 578 843 - -
Glsi08g0500 902 Gene3D Transferase(Phosphotransferase) domain 1 647 864 - -
Glsi08g0500 902 SMART LRR_typ_2 241 264 IPR003591 -
Glsi08g0500 902 SMART LRR_typ_2 265 289 IPR003591 -
Glsi08g0500 902 SMART LRR_typ_2 144 168 IPR003591 -
Glsi08g0500 902 Pfam Leucine rich repeat 236 278 IPR001611 GO:0005515
Glsi08g0500 902 Pfam Leucine rich repeat 169 229 IPR001611 GO:0005515
Glsi08g0500 902 Pfam Leucine rich repeat N-terminal domain 49 87 IPR013210 -
Glsi08g0500 902 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 35 862 - -
Glsi08g0500 902 SMART serkin_6 571 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0500 902 ProSiteProfiles Protein kinase domain profile. 571 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0500 Glsi-ChrGlsi08 4184861 4202233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0500 34 856 Receptor kinase-like Gene Family AT5G01950 53.889 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Glsi08g0500 PK_Tyr_Ser-Thr 9.6e-47 CL0016