Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0498 ATGAAAGTGATGGCGATCGTCATCGGCAACAACAATTCCTGCTCCATTTCTTGTGGTGACCCGGTCAGAAATATACTACCCACGAGGTTTCAAAATCGAGCTTTTCTAGATGCTGCTTACCTCTTCGGATGCTTCAGTTTTAGCCCATTTGTCATTGTTTGGTTTATTTATAACATTGGCTTGCAAGTAACAATCTATTTGCCCTTCGTTTCCGAATCGGCGTGTGCCATCCCGGTAGCTTTATTTTGTCTCAAACGGTCTGATCAAAAGGTTATTGGGATGTATCTTTCAAAGGGTTGGCAGTATGAAGCTGTTTTCGGCTTGTGGTTGTGTTGCCATTTGCTAATGGTTGCTGCGCAGAATCCTATCACTCACCCCACTGAAGTTGACGCGTTGAAAACCATCAAGGAAAGTTTGATTGATCGGAATGGAAATCTGAGTAACTGGAATCGTGGAGACCCATGTACATCTAAGTGGACAGGGGTTTTGTGCTTCAATAAAACATCAACTGATGGCTACCTACATGTTCAACAATTGCAACTACTGAATTTGAACTTGTCTGGAACGTTGGCACCAGAGCTTGGCCTATTATCTTATATGACAATTATGAGCTTTATGTGGAACGATATAACTGGGAGTATACCAAAGGAAATTGGCAACATCACAAGTTTGGAACTCTTGCTTCTGAATGGAAATCAATTAACAGGTCACCTGCCAGAAGAGCTTGGTAATCTTCCAAACCTGAACAGAATACAAATCGATCAAAACTACATAACAGGACCTGTACCGACGTCATTTGCAAACCTTAATATGACAAAGCACTTTCACATGAACAATAATTCACTCAACGGGCAAATCCCACCAGAGCTTTCCCGCTTACCAAACCTTGTTCACCTCCTTCTCGACAACAACAACTTATCAGGACATCTTCCTCCTGAGCTCTCCCAGATGCCAAATATACGTATAATTCAACTTGATAACAATAACTTTGGCGGGGATACTATTCCAGATACTTATGGAAACATGACAAAATTGTTGAAGTTGAGCCTTAGGAACTGCAGCTTGCAAGGACCAGTTCCTGATTTAAGCAGGATACCAAACCTTCTTTATCTTGACCTCAGTTTCAATCAGTTGAATGGATCGATCCCTTCTAATAAGCTTTCTGAAAAAATCACAACCATCGATTTGTCAAACAACAAGCTTACTGAAACTATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTTACTTGGAAACAACTCATTGAATGGCAGTGTTCCTTCCACCATTTGGCAGAACAAGACTTCAAATGGAACAGAAAGATTTCTCTTGGAGTTGCAAAATAATAATCTTACGAGCATATTAGGCAGTACTAATCTTCCTCCAAACGTAACACTCTGGCTTGAGGGAAATCCTCTATGTTCTAATAATGACACTCTAGTTCAGTTCTGTGGATCTGACAGCCCCAGTGACACTGACAACTTGGGTCCAACAAGCTCCAATGTTAGCTGTCCCAGTCAAGCATGCCCCCCTCCTTATGAATATTCTAAAACATCTCCTGTGGAGTGTTTCTGTGCAGCCCCGTTGCTCGTTGATTATCGGTTGAAAAGTCCTGGATTTTCAGATTTTCGTCCATACCTGAATGAATTTGAGGAGTACCTGACTACTGGTCTTAGTTTACTTATTAATCAGCTTAATGTTGATTCCTATATGTGGGAAGAAGGACCTCGATTGAAAATGAGCTTGAAACTTTTTCCCGTATCTGTTGATAACAAAAGCTCTCATATTTTCAATGATAGTGAGGTTCAACGTATCAGAAGCATGTTCAGAGGATGGGCTATTTTTGACAAAGATTTGTTTGGACCTTATGAACTACTCAACTTTATTCTTTTGGATCCTTACAGAGATGTGATTGTCAACTCCCCAAGTTCAGGGATAAGCAAGGGTGCCTTGGCTGGCATAATCTTAGGGGCAATTGCTTTTGCAGTTACATTATCTGCAATTGTTACTGTTCTTATACTGAGAATGCGCATCAGAGATTACCACGCTGTTTCAAAACGACGTCTTTAAGGTGAACAGATGCTGGTTTATGAATTTATGCCAAATGGCACGCTAAGGGATCATCTTACAGCTACTTCGAAAGAGCCTCTGAGCTTCGATATGAGATTGAGGATTGCCCTGGGGTCAGCTAAGGTTGCAGATATGGAAGGAATTGTGCCAGCTCATGTATCTACAGTGGTAAAGGGAACACCGGGTTACCTTGATCCCGAGTACTTCTTGACTCATAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTCCTGGAACTTTTGACAGGAAGGCCACCAATCTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATATCAATCTGGTACGATATTCTCGGTTATCGATGAACGTATGGGGTCTTATCCTTCGGAGTGCATGGAGAAATTTTGGACTCTAGCCCTTAAGTGTAGCCGAGATGAACCAGATGGCCGGCCTCAAATGGCAGAAGTGGTACGAGAGCTTGAAAACATAGGGTCTATGATGCCTGCATTCAATGCCAAGACCAAGATGCAAGAATCTATAACCAGCGATTCTGGAACGATACTCAGTCCATCATCTTCATCCTCTATTATCAAGACTCCATTTATATCTGCAGATGTGTCTGGTAGTGACCTTGATAGTGGAGTGGTACCAACCATTAGGCCAAGATAG 2748 0.4163 MKVMAIVIGNNNSCSISCGDPVRNILPTRFQNRAFLDAAYLFGCFSFSPFVIVWFIYNIGLQVTIYLPFVSESACAIPVALFCLKRSDQKVIGMYLSKGWQYEAVFGLWLCCHLLMVAAQNPITHPTEVDALKTIKESLIDRNGNLSNWNRGDPCTSKWTGVLCFNKTSTDGYLHVQQLQLLNLNLSGTLAPELGLLSYMTIMSFMWNDITGSIPKEIGNITSLELLLLNGNQLTGHLPEELGNLPNLNRIQIDQNYITGPVPTSFANLNMTKHFHMNNNSLNGQIPPELSRLPNLVHLLLDNNNLSGHLPPELSQMPNIRIIQLDNNNFGGDTIPDTYGNMTKLLKLSLRNCSLQGPVPDLSRIPNLLYLDLSFNQLNGSIPSNKLSEKITTIDLSNNKLTETIPSYFSGLPRLQKLLLGNNSLNGSVPSTIWQNKTSNGTERFLLELQNNNLTSILGSTNLPPNVTLWLEGNPLCSNNDTLVQFCGSDSPSDTDNLGPTSSNVSCPSQACPPPYEYSKTSPVECFCAAPLLVDYRLKSPGFSDFRPYLNEFEEYLTTGLSLLINQLNVDSYMWEEGPRLKMSLKLFPVSVDNKSSHIFNDSEVQRIRSMFRGWAIFDKDLFGPYELLNFILLDPYRDVIVNSPSSGISKGALAGIILGAIAFAVTLSAIVTVLILRMRIRDYHAVSKRRLXGEQMLVYEFMPNGTLRDHLTATSKEPLSFDMRLRIALGSAKVADMEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRPPISHGKNIVREVNVAYQSGTIFSVIDERMGSYPSECMEKFWTLALKCSRDEPDGRPQMAEVVRELENIGSMMPAFNAKTKMQESITSDSGTILSPSSSSSIIKTPFISADVSGSDLDSGVVPTIRPR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0498 915 Pfam Leucine rich repeat 390 434 IPR001611 GO:0005515
Glsi08g0498 915 Gene3D Transferase(Phosphotransferase) domain 1 735 877 - -
Glsi08g0498 915 ProSiteProfiles Protein kinase domain profile. 532 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0498 915 Gene3D Ribonuclease Inhibitor 287 334 IPR032675 -
Glsi08g0498 915 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 126 284 - -
Glsi08g0498 915 SUPERFAMILY L domain-like 139 482 - -
Glsi08g0498 915 Pfam Protein kinase domain 747 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0498 915 Pfam Leucine rich repeat N-terminal domain 126 164 IPR013210 -
Glsi08g0498 915 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 285 387 - -
Glsi08g0498 915 Gene3D Transferase(Phosphotransferase) domain 1 672 734 - -
Glsi08g0498 915 SUPERFAMILY Protein kinase-like (PK-like) 693 860 IPR011009 -
Glsi08g0498 915 Gene3D Ribonuclease Inhibitor 335 384 IPR032675 -
Glsi08g0498 915 Gene3D Ribonuclease Inhibitor 125 286 IPR032675 -
Glsi08g0498 915 SMART LRR_typ_2 293 317 IPR003591 -
Glsi08g0498 915 SMART LRR_typ_2 412 436 IPR003591 -
Glsi08g0498 915 SMART LRR_typ_2 221 245 IPR003591 -
Glsi08g0498 915 SMART LRR_typ_2 365 389 IPR003591 -
Glsi08g0498 915 Gene3D Ribonuclease Inhibitor 385 510 IPR032675 -
Glsi08g0498 915 PANTHER RECEPTOR-LIKE PROTEIN 55 695 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0498 Glsi-ChrGlsi08 4156837 4170197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0498 695 869 Receptor kinase-like Gene Family AT5G01950 53.211 5.32e-57 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Glsi08g0498 Pkinase 5.3e-11 CL0016