Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0494 ATGAAGTTCTATTCTACTTCATTGCACCCTTTCATTTTCATCATTGTTATTCTTTTTCCTCTGGCTGTTGCGGATCTAAATTCAGATAAGCAAGCCCTTCTTGATTTTGCTGTTGCTGTCCCCCATCGTCGGAACCTCAAGTGGAATCCAGCCACCTCAGTCTGTACATGGTTTGGCGTCACTTGCAATACAAATGGCACTCATATTGTTTACCTCCGGCTTCCTGGAGTTGGACTAGTTGGCTCCATCCCAGCCAATACACTTGGAAGGCTTGACAACCTCAAAATTATCAGCCTTCGCTCCAACCTACTCACTGGAAATTTACCTAAAGATATTACTTCTCTACCTTCTCTCCAGTATCTTTACCTCCAGCACAATAACCTTACTGGTGTTATACCCACCTCATTTTCACCCCAACTTAATGCACTCGATCTGTCCTATAATTCCTTCACTGGTGGCATTCCAAAGACATTACAAAATTTAACAGAACTAACTAGATTGAACCTGCAGAACAACTCCCTCTCTGGAGAAATTCCTAATCTCAATGTCACTAAGCTCAAGCATTTGAATTTAAGTTACAACCAGTTGAATGGTTCTATCCCAGCAGCTCTGCAGACGTTTCCTATTTCATCCTTTGAAGGGAATTCTCTCTTATGTGGAGCACCTCTAAAACCCTGCTCTCCAATCCCTCCTGCACCTTCTCCACCCTTCACTCCAGCCCCACCAACTCCTGAAAAACAAAGCTCCAAAAATAAATTGAGTAAGGTAGCCATTATTGCAATTGCTGTTGGCGGAGCTTTACTGCTACTTTTTGTAGCTCTTGTCATTGTTCTTTGCTGTTTAAAGAAGAAAGATAATGAAAGATCCAGTGTAATTAAAGGAAAGGGTCCTAGTGGTGGGAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTGCAAGAACCTGAGAAAAATAAGTTGGTTTTCTTTGAGGGCTGTTCTTATAATTTTGATCTGGAGGATTTGCTAAGAGCTTCAGCTGAAGTTCTGGGAAAAGGAAGTTATGGTACCGCATATAAGGCTGTATTGGAGGAGTCAACTACAGTTGTGGTGAAAAGGTTGAAAGAAGTAGTGGTAGGCAAGAGGGACTTTGAACAGCAGATGGAGACTGTGGGAAGGGTTGGGCAGCACCCAAACGTTGTGCCCCTTCGTGCTTATTATTATTCAAAGGATGAGAAGCTTTTGGTTTATGACTATGTCCCAGGAGGCAACCTATCAACACTCTTGCATGGCAACAGAGCAAGTGGAAGAAGTCCGCTAGATTGGGACTCCCGATTAAAAATCTCCCTTGGAATTGCCAGAGGAATTGCCCACATACATTCTGTTGGTGGTCCAAGATTCACACATGGAAATATAAAGTCCTCCAATGTCCTCCTCAGCCAAGATAATGATGGCTGCATTTCTGATTTTGGCTTGACTCCACTCATGAATGTGTCAGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAATCCGTAAGCACACTCATAAATCAGATGTATACAGCTATGGTGTCCTCCTTCTGGAAATGCTTACTGGGAAAGCACCTCTTCAGTCACCCAGCCGCGATGACATGGTTGATCTCCCTAGATGGGTCCACTCTGTTGTTAGGGAGGAATGGACAGCTGAGGTTTTTGATGTGGAGCTAATGGGGTATCCAAACATTGAAGAAATGGTTCAAATGTTGCAGATTGGCATGGCCTGTGTGGCAAAGGTGCCAGATATGCGACCTAGCATGGATGAAGTTGTGAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGAGAATAAATCCAAGGACTCAAATGTCCAGACTCCATAA 1899 0.4408 MKFYSTSLHPFIFIIVILFPLAVADLNSDKQALLDFAVAVPHRRNLKWNPATSVCTWFGVTCNTNGTHIVYLRLPGVGLVGSIPANTLGRLDNLKIISLRSNLLTGNLPKDITSLPSLQYLYLQHNNLTGVIPTSFSPQLNALDLSYNSFTGGIPKTLQNLTELTRLNLQNNSLSGEIPNLNVTKLKHLNLSYNQLNGSIPAALQTFPISSFEGNSLLCGAPLKPCSPIPPAPSPPFTPAPPTPEKQSSKNKLSKVAIIAIAVGGALLLLFVALVIVLCCLKKKDNERSSVIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMETVGRVGQHPNVVPLRAYYYSKDEKLLVYDYVPGGNLSTLLHGNRASGRSPLDWDSRLKISLGIARGIAHIHSVGGPRFTHGNIKSSNVLLSQDNDGCISDFGLTPLMNVSATPSRAAGYRAPEVIEIRKHTHKSDVYSYGVLLLEMLTGKAPLQSPSRDDMVDLPRWVHSVVREEWTAEVFDVELMGYPNIEEMVQMLQIGMACVAKVPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0494 632 MobiDBLite consensus disorder prediction 299 313 - -
Glsi08g0494 632 Gene3D Transferase(Phosphotransferase) domain 1 414 631 - -
Glsi08g0494 632 ProSitePatterns Protein kinases ATP-binding region signature. 344 375 IPR017441 GO:0005524
Glsi08g0494 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 414 620 - -
Glsi08g0494 632 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Glsi08g0494 632 CDD STKc_IRAK 344 608 - -
Glsi08g0494 632 PANTHER OS05G0588300 PROTEIN 12 620 - -
Glsi08g0494 632 Pfam Protein kinase domain 341 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0494 632 FunFam pollen receptor-like kinase 1 306 413 - -
Glsi08g0494 632 SUPERFAMILY Protein kinase-like (PK-like) 342 613 IPR011009 -
Glsi08g0494 632 ProSiteProfiles Leucine-rich repeat profile. 117 138 IPR001611 GO:0005515
Glsi08g0494 632 FunFam Probable inactive receptor kinase RLK902 26 182 - -
Glsi08g0494 632 SMART LRR_typ_2 183 214 IPR003591 -
Glsi08g0494 632 SMART LRR_typ_2 115 138 IPR003591 -
Glsi08g0494 632 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Glsi08g0494 632 MobiDBLite consensus disorder prediction 606 623 - -
Glsi08g0494 632 SUPERFAMILY L domain-like 51 226 - -
Glsi08g0494 632 MobiDBLite consensus disorder prediction 230 249 - -
Glsi08g0494 632 Pfam Leucine rich repeat 118 174 IPR001611 GO:0005515
Glsi08g0494 632 ProSiteProfiles Protein kinase domain profile. 338 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0494 632 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515
Glsi08g0494 632 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Glsi08g0494 632 Gene3D Phosphorylase Kinase; domain 1 306 413 - -
Glsi08g0494 632 Gene3D Ribonuclease Inhibitor 183 226 IPR032675 -
Glsi08g0494 632 MobiDBLite consensus disorder prediction 606 632 - -
Glsi08g0494 632 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0494 Glsi-ChrGlsi08 4112405 4115179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0494 3 630 Receptor kinase-like Gene Family AT5G58300 68.396 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g0494 Pkinase 1.3e-37 CL0016