Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0490 ATGTCCGTACAATCTACTCTGAAGCGCCAACAGCTCCTCCACCCTCCAAGCACCGATCTGGAGGGTGACCCGCCATGTAAAACAAGGAGGAAAACCCAGCAAAGGCTCATCAGAATCATACTCACTGATCACGATGCTACTGATTCTGACTCTTCCACCGATGAAGATCAAGAAATAGAAAAACCAAAAAGGTCACGGAGAGTGAAGAAGCACATCACACAGATCAGTTTGCATCTTCCCTTCTCAAATTCTCCTTCCTCTTCCTCTTCTTCCTCCTCTTCCATTCACTCCTCTACCAAACCAAACCCGACCCACTTCAAGAGACCCAAGCTGTCGCTGAACTGCAACGCCTCCTCTCGCCGCCACAACAAGTTCAGGGGCGTTCGCCAGAGGCCCTGGGGCCGGTGGGCCGCGGAGATCCGGGACCCGACCCGTCGGAAACGGGTATGGCTCGGGACATTTGACACGGCAGAGGAGGCTGCCACGGAGTACGACAAGGCTGCGCTGAAGCTGAAGGGTCCCAACGCCGTTACCAACTTTCCTAACTCCGTCGCGAAGGAAGAGAAATCGACGCCGGCCGCCACGCGTGTACGCCCAAGCACCGAAGGCTTCGCCTCGTACTCCGAGACGGTGGCGTCGCCCACGTCCGTCCTGGCCTACGACGGCGATTCAACTGCCTTCGACGGTTTTTGTTACGGCGACGTGGATGCGTTCGGGTTCGATATTGATGTGCCGTTAAGTCTGCCGGACATGAACACGATGGTGTCGAGTCAGCAGTTTGGGAAAGAAGAGTTCGGCGAGTTTGACGTCGACGACTTCTTGACGTGGCCCAACTAA 837 0.5568 MSVQSTLKRQQLLHPPSTDLEGDPPCKTRRKTQQRLIRIILTDHDATDSDSSTDEDQEIEKPKRSRRVKKHITQISLHLPFSNSPSSSSSSSSSIHSSTKPNPTHFKRPKLSLNCNASSRRHNKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAATEYDKAALKLKGPNAVTNFPNSVAKEEKSTPAATRVRPSTEGFASYSETVASPTSVLAYDGDSTAFDGFCYGDVDAFGFDIDVPLSLPDMNTMVSSQQFGKEEFGEFDVDDFLTWPN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0490 278 MobiDBLite consensus disorder prediction 1 111 - -
Glsi08g0490 278 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 MobiDBLite consensus disorder prediction 23 48 - -
Glsi08g0490 278 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Glsi08g0490 278 PIRSF PTI6 5 278 IPR017392 GO:0003700
Glsi08g0490 278 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 MobiDBLite consensus disorder prediction 76 111 - -
Glsi08g0490 278 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 218 - -
Glsi08g0490 278 Gene3D AP2/ERF domain 123 183 IPR036955 GO:0003700|GO:0006355
Glsi08g0490 278 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Glsi08g0490 278 FunFam Ethylene-responsive transcription factor 2 123 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0490 Glsi-ChrGlsi08 4101424 4102260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0490 27 220 AP2-EREBP Transcription Factor Family AT4G27950 42.647 1.73e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g0490 AP2 9.4e-16 CL0081