Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0489 ATGAAGGCACAACGTGTTCCGGATACGACGAATGAGAGGGTGAAGCTTGTATTGAGTCGATGCTCCGATTTTGGTACATTTTCTTGTCCGATGAAAGTAACCTCTGAAGTAAATATGATTTTTATATCCCGAATTTCATTTGTGGAATTTGCTTCTGGAATTGTGTTATTTTTCGTTCTATCTGGATTTGTTGTCATTAGAATTTTGTATTTAAGCATGCCTCCTAACAAAGATGCAGACATGGCAGATGAAACACATAATGATACGAGGGAGGGCTTTGTAGAAATTGCTCAGTTGGATCCCGCCAAAAAGAAGGAAAAGAACATTGTGATGCAAGATCCTGATGATGGTTGCCCCATTGCGGAGCTCCAACAGCAAAATCATGCGACTAACCCGTCTGAGGTGTGTAAAACAAGGCAGAAAACCCAACAAAAGCTTGTCAGAATCATAGTCACTGACCCTGATGCTACTGATACCGACTCTTGCCCCAGTGAAGATCAAGAAAAACATGAAACTTTACGGGGAGGGGATAGGCAAATCTCACAGATCCGGATCGACATTCCCTCCTTGAATTCTGCTTCCCCATTTCATTCTACTCCCTTTTCTACCAAGGAAGACTTGACCCACTTTGAGAAACCTAAGAAATCCATCAGCTGCAATGCATCATCTGGCGGCCACAAGAAGTTCCGAGGTGTTCGACAGAGGAAATGGGGTAGGTGGGCTGCTGAAATTCGAGACCCAATCCGTCGAAAACGTATCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCCAGAGAGTATGACAGGGCTGCATTGAAGCTTAAGGGGACTGATGCCATTACCAACTTCCCTCACTCTACGATGATGGAGACATCTTCCGCCGCTCATGTCAGTCCAGGCACTGATAGTTTTACCTCGTTCAGTGCAGTGGCATCGCCAACCTCCGTCTTGTCTTAG 960 0.4531 MKAQRVPDTTNERVKLVLSRCSDFGTFSCPMKVTSEVNMIFISRISFVEFASGIVLFFVLSGFVVIRILYLSMPPNKDADMADETHNDTREGFVEIAQLDPAKKKEKNIVMQDPDDGCPIAELQQQNHATNPSEVCKTRQKTQQKLVRIIVTDPDATDTDSCPSEDQEKHETLRGGDRQISQIRIDIPSLNSASPFHSTPFSTKEDLTHFEKPKKSISCNASSGGHKKFRGVRQRKWGRWAAEIRDPIRRKRIWLGTFDTAEEAAREYDRAALKLKGTDAITNFPHSTMMETSSAAHVSPGTDSFTSFSAVASPTSVLS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0489 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 143 296 - -
Glsi08g0489 319 MobiDBLite consensus disorder prediction 162 176 - -
Glsi08g0489 319 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 PRINTS Ethylene responsive element binding protein signature 251 267 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 Pfam AP2 domain 228 277 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Glsi08g0489 319 Gene3D AP2/ERF domain 227 287 IPR036955 GO:0003700|GO:0006355
Glsi08g0489 319 MobiDBLite consensus disorder prediction 154 176 - -
Glsi08g0489 319 SMART rav1_2 228 291 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 ProSiteProfiles AP2/ERF domain profile. 228 285 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 CDD AP2 227 287 IPR001471 GO:0003700|GO:0006355
Glsi08g0489 319 FunFam Ethylene-responsive transcription factor 2 227 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0489 Glsi-ChrGlsi08 4090743 4094792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0489 137 319 AP2-EREBP Transcription Factor Family AT4G27950 40.933 1.44e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g0489 AP2 1.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0489 08 4090743 4094792 Glsi08g0489 08 4090743 4094792 ECH