Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0483 ATGTCGTACGTGCCCCCGCACCTCAGGAACTCCAGCTCCACTACTGTTGCTACCAGAATATCGTCTCTAGCCCTAGACAACAACGATCACAGCAGCAAGCTCTCCTTCTCCTCAAACTCTCACTCTAACAACTCTCCTACTCCTTCTCTCCCCTCCACCTTCTCCAATCCCTCTCGCCGGAGCTCCGGTGCTCCTCCTCGTGTTCTCTCCGTTCCCGACACCGTCTTCCCTAACTGGCAACCGTCCGAACGCGTCTCTCGTATGAACCCCGAGCAGATTGAAGAGGTCTGTCTACGGCTTAATCTTGATGTTACTGTTGCTTCTGATTCTCCTCCCGCACCTGCACCAATAGAATCATTTACAGATATGTGTTTGCACCCGAGTATCATGAAGGATATTGCGTATCATGAATACACAAGGCCAACTTCTATACAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAATCTCCAATTCGGCGTGGTGATGGTCCTTTAGCTTTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCACTCGAGTCATTAAAAACTGCAATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTACGAGCGGGAGTGGACGTAGTGGTTGCTACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAACACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTCGAACCACAGATAAGAGAGGTGATGAGAAATCTTCCAGAGAAGCATCAGACATTGCTATTTAGTGCAACTATGCCTGTGGAGATTGAAGCCTTAGCAAAGGAGTACTTAACTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAAATCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCAGCTTCTAGATTTGCTTGTAGAGGAAACATCACAGGCTAAAAAATCCGGTCATCCAGTTCCTTTAACAATTGTGTTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTAGCTCAAGGGTTATCTGCAGTTTCCCTTCATGGTGGGCGTAGTCAGAGTGAAAGAGAGGCTGCTTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGTTTGGATGTCACAGGAGTGTCGCATGTTATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGTAGGACAGGGCGTGCAGGATCAACAGGCCAAGCAACTTCTTTTTACACTGATCGTGATATGTTCCTTGTGGCAAATATAAGGAAAGCTATAGCAGATGCTCAATCTGGGAACACTCTGGCATTTGCAACTGGAAAGCTTGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCGCAAAAGGAGGCAAAGATTGCTTTATCCAAAGACTTGGGAATGGGAGCTGCTTCAATTACTATAGAGGATAAGTATAGGTTCATGATTACTGCCTCAAACATTAAAAAAGAGGGTGCAGCAGATAGTGCTTGGGAGGATTAA 1692 0.4551 MSYVPPHLRNSSSTTVATRISSLALDNNDHSSKLSFSSNSHSNNSPTPSLPSTFSNPSRRSSGAPPRVLSVPDTVFPNWQPSERVSRMNPEQIEEVCLRLNLDVTVASDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDVVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLTSPVQVKVGKVSSPTANVCQNLVKVSENEKIDQLLDLLVEETSQAKKSGHPVPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAQSGNTLAFATGKLARRKEKEAAAAQKEAKIALSKDLGMGAASITIEDKYRFMITASNIKKEGAADSAWED 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0483 563 SMART ultradead3 137 353 IPR014001 -
Glsi08g0483 563 FunFam Probable ATP-dependent RNA helicase DDX41 83 326 - -
Glsi08g0483 563 Coils Coil 507 527 - -
Glsi08g0483 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 486 IPR027417 -
Glsi08g0483 563 SMART helicmild6 385 466 IPR001650 -
Glsi08g0483 563 CDD SF2_C_DEAD 339 475 - -
Glsi08g0483 563 MobiDBLite consensus disorder prediction 29 74 - -
Glsi08g0483 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 325 IPR014001 -
Glsi08g0483 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 507 IPR001650 -
Glsi08g0483 563 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 108 518 - -
Glsi08g0483 563 Pfam Helicase conserved C-terminal domain 349 466 IPR001650 -
Glsi08g0483 563 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Glsi08g0483 563 Coils Coil 204 224 - -
Glsi08g0483 563 Gene3D - 331 525 IPR027417 -
Glsi08g0483 563 MobiDBLite consensus disorder prediction 29 63 - -
Glsi08g0483 563 FunFam ATP-dependent RNA helicase RhlB 327 502 - -
Glsi08g0483 563 Gene3D - 79 329 IPR027417 -
Glsi08g0483 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Glsi08g0483 563 CDD DEADc 129 326 - -
Glsi08g0483 563 Pfam DEAD/DEAH box helicase 142 312 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0483 Glsi-ChrGlsi08 4052253 4061519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0483 118 488 Eukaryotic Initiation Factors Gene Family AT1G72730 36.533 1.34e-70 231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0483 08 4052253 4061519 Glsi08g0483 08 4052253 4061519 ECH