Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0482 ATGTTTCTTTTCTCTATAAAATCCCTTCCCACCCTACCTCTTAACCAGCCTTCATTTCTCTCGTCTCACAGAAAAAAACACCGTTACCATCGATTGCTACCCACAATGGATCTCCTCCTGCTGGAGAAGACCCTCATCGGTCTCTTCGTCGCCGTCGTGGTCGCCATTACCGTCTCCAAGCTCCGAGGGAAGCGCTTCAAGCTCCCACCGGGTCCTCTCCCCGTCCCCATATTTGGAAACTGGCTCCAAGTCGGCGACGACTTGAACCACAGGAACCTCACCGATTTGGCCAAGAAATTCGGCGACATATTCTTGCTCCGGATGGGTCAGCGGAATCTGGTGGTGGTTTCGTCACCTGAGCTGGCCAAGGAGGTGTTGCATACACAGGGGGTGGAATTCGGGTCGCGGACCCGGAATGTGGTGTTCGATATATTCACGGGTAAGGGTCAGGATATGGTGTTCACTGTGTATGGCGAGCACTGGAGGAAGATGAGGCGGATCATGACGGTACCGTTTTTCACGAACAAGGTGGTACAGCAGTACCGGTACGGGTGGGAAGAGGAAGTGGCGCGTGTGGTGGAGGATGTTAAGAAGAACCCGGAGGCGGCGACCAATGGGATCGTGCTGAGGAAGCGGTTGCAGCTGATGATGTACAACAACTTGTACAGGATCATGTTCGATAGAAGGTTTGAGAGCGAAGAGGATCCATTGTTCCAGAAGCTCAAGGCCTTGAACGGAGAGAGAAGTCGTTTGGCTCAGAGCTTTGAGTACAATTATGGCGATTTTATTCCAATTTTGAGGCCTTTCTTGAGAGGGTATTTGAAAATCTGTAAGGAAGTGAAAGAGAGAAGATTGCAGCTCTTCAAAGATTACTTCGTCGACGAGAGGAAGAAGCTTGCGAGTACCAAGAGTACGAGCAACGAAGGACTAAAATGCGCCATTGACCACATTTTGGACGCCCAGAAGAAGGGGGAGATCAACGAGGACAATGTCCTCTACATTGTTGAGAACATTAACGTTGCTGCAATTGAGACAACCCTATGGTCTGTCGAGTGGGGCATAGCTGAGCTAGTGAACCACCCAGAGGTCCAGAAGAAGCTTCGGGATGAGCTCGACACAGTCCTCGGACCCGGACACCAGTTGACGGAGCCTGACATCCACAACCTCCCTTACTTGCAGGCCGTGGTCAAAGAGGCCCTTCGCCTTCGTATGGCAATTCCACTCCTCGTCCCACACATGAACCTTCACGACGCAAAGCTCGGTGGCTATGACATTCCTGCAGAGAGCAAGATCCTGGTCAATGCATGGTGGCTCGCCAACAACCCAGCTCACTGGAAGAACCCAGAGCAGTTCCGGCCAGAGAGGTTCCTGGAAGAGGAGTCCAAGGTGGAGGCTAATGGGAATGACTTCAGGTACCTTCCTTTTGGTGTTGGGAGAAGGAGCTGCCCTGGAATTATCCTTGCACTGCCTATTCTGGGCATTACTTTAGGACGTTTGGTCCAGAACTTTGAGCTCTTGCCTCCTCCTGGGCACTCCCAGATTGATACCTCTGAGAAAGGAGGACAGTTTAGTTTGCACATACTGAAGCATTCCACTATTGTTTTAAAGCCCCGATCTTTTTAG 1623 0.5132 MFLFSIKSLPTLPLNQPSFLSSHRKKHRYHRLLPTMDLLLLEKTLIGLFVAVVVAITVSKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEVARVVEDVKKNPEAATNGIVLRKRLQLMMYNNLYRIMFDRRFESEEDPLFQKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVDERKKLASTKSTSNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSVEWGIAELVNHPEVQKKLRDELDTVLGPGHQLTEPDIHNLPYLQAVVKEALRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKNPEQFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGHSQIDTSEKGGQFSLHILKHSTIVLKPRSF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0482 540 CDD CYP73 98 531 - -
Glsi08g0482 540 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 36 539 - -
Glsi08g0482 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 475 484 IPR017972 GO:0005506|GO:0016705
Glsi08g0482 540 FunFam Trans-cinnamate 4-monooxygenase 58 532 - -
Glsi08g0482 540 PRINTS P450 superfamily signature 473 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS P450 superfamily signature 341 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS P450 superfamily signature 394 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 SUPERFAMILY Cytochrome P450 69 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 121 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 482 505 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 434 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 472 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 Pfam Cytochrome P450 69 530 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi08g0482 540 Gene3D Cytochrome P450 62 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0482 Glsi-ChrGlsi08 4039967 4042992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0482 36 539 Monolignol Biosynthesis Gene Families AT2G30490 85.714 0.0 892