Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0480 ATGTTTCGTGTGGGGCGGCCACTGCCCATGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCTCAATTCTGCAACCAGTGCGGGTAAATTATCCCTTTCCCTGCCTTTATGCGCTGAATTCGATCTATTTGCTATTATTGGGGTGATCTCACGCTGCGAGGGTAGTTTGGGGCTATGGGTCGTGTGTCCATTGCTTCTTTTTGGATTTGCAGAGGAATTGAAGCTTGATAACCATGAGTCCATACCTGCTTATGAGGATTCCGTTTTCTGTAATAAATTCCACATTGAAGAAACTGGTTGGAGGGATTGCAGCTTCTGCAACAAGCCTATCCATTGTGGATGCATCGTATCTAAGGATTTGTTCGAGTACCTTGATTTTGGTGGTATAGGTTGCATGAGCTGTGTAAAGGCTTCCCAATTTTGTTTGATGCAGAATACTGAAATTCCTAATGGGGTTCTAACATCGACAAAAAAAAATTCAAGTGATCGACATTCTACTCATATTGATGGCAGACTGTTGATGGATAGTGTTGATGAAGGAAAACTTATGCAATTGTGCAGAATTGTTGAAGCTACTGAAGCCAGCCACTGGCCTCAACCTCAGAGAGATGAAATAATTTCATCTAGTGGTGGGCTAAACAGCAAAGAAGTTAAGTGCCCAATCAGGGAAGTTGATTCAGGATTTTCAAATCTGATGGCAACATCTATTCAGTCATTAACATTTCCTCTGTTAGAAAATAATAGATCAACATGGGAGATTAAAAATATGCATGAACCACCTGCACAGCCTTCTTTGAGTATGTCTCTGGGAACTCCATCAGGAAACTCTGTCCTGCCTTCCACTGGAGAAATTGTAGAAGAAAGGCTAGAGGGCAAACCATCTTCCTTCCATCAAGGGCAAAGATCTCGCCCTATATTGCCTAAGCCATTGAAGACTGGGCTTACCATGAACTTAGAAATAAATAAAAGAATGATTTCTCAGGCACGTGTTGCTCGGCCACCTGCTGAGGGAAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCCGGATTACTGATCAAGAGCTGGAGCTATTGTCTGGAAATTTGAAGTCCAATGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTATTTTCCTCCTATTTCTCAATCAGAAGGTCTTCCTTTGCGAATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGCAGGATGTATGTACTGGAGGGTGTGACCCCTTGTATACAGTCAATGCAACTATGTGCGGGTGATACTGTAACATTTAGTAGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAACTTCTGTAGATACACAGGATGCCTCTACATCTGCACGTTCTAATGGCATTTCAATGAAGGAAACAACCTTTTCTGGTGCATCTGAGAACCTGCCCTCAGGAAGTAGCTATTCTAATATGCTTCAGTCAATGGAAGGGAACAGGGAACCTCACTTAAATGAAGTTCCAGAACACCTACAATCAGGTAGCGGGGCTGCTGAATTGCCTAAAACCAAAAATTTTGGGGAGATGACAAAAAATGATTCACTGCAGCAATCAATTTCAGCTTCAGAGAAGAAGAGGACTCGGAATATTGGGCCTAAAAGTAAGAGGTTGCTCATTTATTGTGAAGACGCTCTGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTACTTCGCCCGCCGCCTAGTGTCCAGCCAAGCATTGTCACAATTGAGGACCACATATTTGAAGAGTACAATGAACCCCCAGTTTTTGGAAAGAGAACCATATTCAGTGCCTGTCCATCTGGGGGACAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAGGCTGCCATTAGAGGTTCTCCTTCCTCCCAAGTGGACATGTTCTGAAAACGTCTGGGATGCAAGCAGGTCTTTTTGTTCTGCATCAGAGGAGCTGAGTCTGAAGGAATTGGAAAATCTTCTGAAAACCAGCAAAGATTTTAAGAAGCGAAGAATTGTAGAAAACAGCAAATTGTCGCAAGAATTTGAACCTTCTGGCTTAGATGCTCTTGCTAGTGCAGCAGTTTTGGGAGATAATCCTGTTGACCCTTCTGATTCAGCTGGAGCCACCACCAAACATCCTAGACATCGTCCTGGCTGCACTTGCATAGTTTGCATTCAGCCACCAAGTGGGAAGGGAAGACATCATCCGACATGTACTTGCAATGTGTGTATGACTGTGAAAAGGCGTTTCAAAACTCTTATGCTGCGTAAGAAGAAACGCCAATCAGAGCGTGAAGCAGATGCTGCACTGATGAATCATAGAGATGAGCCAGATATGAATGGAGCATTAAGAGAAGAGACAGGTCATTTGGAGAATGAGGGAAGTCTAAACAGAAGTCAACCTGAGGTGGGTGAGCCTAGTGCGGGACCAATAGATCTGAATTTTCATCCCAATCGGGAAGACATGCAAGTTGATGTACCTGGACAGAGCATGAATGGTCATCTTGAAGCTCTAAAGTACCCATTTCAGGAGTATATGAATCAAAATGGCCTATGA 2664 0.4381 MFRVGRPLPMNGRRGGLCDLVDSLNSATSAGKLSLSLPLCAEFDLFAIIGVISRCEGSLGLWVVCPLLLFGFAEELKLDNHESIPAYEDSVFCNKFHIEETGWRDCSFCNKPIHCGCIVSKDLFEYLDFGGIGCMSCVKASQFCLMQNTEIPNGVLTSTKKNSSDRHSTHIDGRLLMDSVDEGKLMQLCRIVEATEASHWPQPQRDEIISSSGGLNSKEVKCPIREVDSGFSNLMATSIQSLTFPLLENNRSTWEIKNMHEPPAQPSLSMSLGTPSGNSVLPSTGEIVEERLEGKPSSFHQGQRSRPILPKPLKTGLTMNLEINKRMISQARVARPPAEGRGKNQLLPRYWPRITDQELELLSGNLKSNVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLCAGDTVTFSRIDPGGKLVMGFRKASTSVDTQDASTSARSNGISMKETTFSGASENLPSGSSYSNMLQSMEGNREPHLNEVPEHLQSGSGAAELPKTKNFGEMTKNDSLQQSISASEKKRTRNIGPKSKRLLIYCEDALELRLTWEEAQDLLRPPPSVQPSIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWAQCDDCSKWRRLPLEVLLPPKWTCSENVWDASRSFCSASEELSLKELENLLKTSKDFKKRRIVENSKLSQEFEPSGLDALASAAVLGDNPVDPSDSAGATTKHPRHRPGCTCIVCIQPPSGKGRHHPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAALMNHRDEPDMNGALREETGHLENEGSLNRSQPEVGEPSAGPIDLNFHPNREDMQVDVPGQSMNGHLEALKYPFQEYMNQNGL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0480 887 Pfam B3 DNA binding domain 374 473 IPR003340 GO:0003677
Glsi08g0480 887 MobiDBLite consensus disorder prediction 261 280 - -
Glsi08g0480 887 Pfam CW-type Zinc Finger 644 686 IPR011124 GO:0008270
Glsi08g0480 887 Gene3D - 352 479 IPR015300 -
Glsi08g0480 887 MobiDBLite consensus disorder prediction 264 280 - -
Glsi08g0480 887 FunFam B3 domain-containing transcription repressor VAL1 352 479 - -
Glsi08g0480 887 CDD B3_DNA 372 473 IPR003340 GO:0003677
Glsi08g0480 887 ProSiteProfiles B3 DNA-binding domain profile. 374 475 IPR003340 GO:0003677
Glsi08g0480 887 SMART B3_2 374 475 IPR003340 GO:0003677
Glsi08g0480 887 Gene3D - 642 697 - -
Glsi08g0480 887 ProSiteProfiles Zinc finger CW-type profile. 639 689 IPR011124 GO:0008270
Glsi08g0480 887 MobiDBLite consensus disorder prediction 827 850 - -
Glsi08g0480 887 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 84 885 - -
Glsi08g0480 887 SUPERFAMILY DNA-binding pseudobarrel domain 371 474 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0480 Glsi-ChrGlsi08 4021539 4028791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0480 86 860 B3 DNA Binding Superfamily AT2G30470 49.936 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi08g0480 B3 1e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0480 08 4021539 4028791 Glsi08g0480 08 4021539 4028791 ECH