Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0478 ATGCGACACTTGCTTGCCTCTCCAACTGCATCTTCTTCGACTCGTGGTTTCGACTTTTGGAGCGGCACAAGGGCAGCTAGTGCAGTGCCAGTGACTCAGACAGTGAGCAGTGTCACGCTGCACCCCGCCGTGGCCGGTAACTCTGAATATATCGTCCGTTCAAAGTTCGAAAAGCTTGACATATTATCATTGTTGGAACCAAGCAAAGCTAAGGCAGTGAATGTCGACGGAGTAAACGTCACAGTTGTTTTTCGACCTCAACGAGCCTTGCCTTTGTGCAATATTAAAAGGATGGAGGTAGTTTTGGCAGCATCTTCTGTTGATGCTGGGATTGGCTGTTGGGACCTTCAAACAGGGGCTGAGCAGCTGCGCTATAAATCTTGCGCTTCCCCTCCTCATGGCCTCATTTGTGTGGGCGGTCGCTTCCTTGTATCTTCCCAGCTTCGAGACTCATCGGCCTCCTCTAGTTTAGTTTTCCACTGGTGTTGGTCCAAGCCTCAAGTAGAAGTTAAGAGCTTTCCAGCTGAACCAATCAAGCCACTTGCTGCTAATCACCAAGGCACTTATATAGTTGGTGGAGGTTCATCAGGTGACATATACTTGTGGGAGGTTGAAAGTGGCAGATTGCTTAAGAAGTGGTATGCTCACTATAGGGCTGTGACTTGCCTGGTATTTTCTGAAGATGACTCACTGCTGATTTCTGGTTCAGAAGATGGATGCATAAGAGTTTGGTCCCTGTTCATGATATTTGATGATTTGAAAAGGCAGGAAGCGAGTCATCTTTATGAGCATAGTTTTACAGAGCACACCCTTCCTGTAACTGGCATTGTAATTGGTTATGGAGCATCCAATGCCATTATAATTTCAGCTTCAGAGGATCGGACCTGTAAGGTTTGGAGCTTATCTAGAGGAATACTACTAAGAAATATAGTTTTCCCTACAATAATTGATGCCATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTCATTGCTGCTCTTAACACTGAAAGGATCTATAATGATAATTATGGGATGCATATCATTGGTTCATTCTCTAACCACAGCAAGGCAGTTACTTGCTTAGCATATGGTGCGAGTGAGAATTTGTTAATCTCTGGATCAGAGGATGGAATGGTTCGTGTTTGGAATGCAAAAACTCATAATATTGTCCGCATGTTTAAACATGCAAAAGGACCTGTAAGTAATATTCTTGTTGTTAGACAACAACTTGACTCAAGTAATCGTATATCTTCTAATTTACAAGCATCCTCTAGAAGACAGGGACCTTTATTACCCCCACCACTGGAAAAATATGCAAATTCAATAGATGAAGAAGACTCGGATGTTAAGACTGTTGTTAGCCTCCAGGATGGCAGGAGTTGTATGGATGTTTCATACATCAGTTCTCAGGTTATGTCTAATCAAATTAAGGAATTTCAGCATCATGGTTCTGCTGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACTCGATTGCAGAAGGTCCATGGAAATGGTTATACAATGGAAGAAGATGTATGAAAATTTACATCAATTCTGTGTAAACGAGTTCTTGGATGGTGGTCAAGCAAGAACCTCAAATGAAAACGGCATTTAA 1644 0.4258 MRHLLASPTASSSTRGFDFWSGTRAASAVPVTQTVSSVTLHPAVAGNSEYIVRSKFEKLDILSLLEPSKAKAVNVDGVNVTVVFRPQRALPLCNIKRMEVVLAASSVDAGIGCWDLQTGAEQLRYKSCASPPHGLICVGGRFLVSSQLRDSSASSSLVFHWCWSKPQVEVKSFPAEPIKPLAANHQGTYIVGGGSSGDIYLWEVESGRLLKKWYAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLFMIFDDLKRQEASHLYEHSFTEHTLPVTGIVIGYGASNAIIISASEDRTCKVWSLSRGILLRNIVFPTIIDAIALDPAEHVFYAGSRDGKIFIAALNTERIYNDNYGMHIIGSFSNHSKAVTCLAYGASENLLISGSEDGMVRVWNAKTHNIVRMFKHAKGPVSNILVVRQQLDSSNRISSNLQASSRRQGPLLPPPLEKYANSIDEEDSDVKTVVSLQDGRSCMDVSYISSQVMSNQIKEFQHHGSAAASEMEMEKLKLDCRRSMEMVIQWKKMYENLHQFCVNEFLDGGQARTSNENGI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0478 547 Gene3D - 85 313 IPR015943 GO:0005515
Glsi08g0478 547 PANTHER WD-REPEAT PROTEIN 18 99 534 IPR045227 -
Glsi08g0478 547 SMART WD40_4 166 203 IPR001680 GO:0005515
Glsi08g0478 547 SMART WD40_4 353 392 IPR001680 GO:0005515
Glsi08g0478 547 SMART WD40_4 259 300 IPR001680 GO:0005515
Glsi08g0478 547 SMART WD40_4 206 245 IPR001680 GO:0005515
Glsi08g0478 547 SMART WD40_4 303 341 IPR001680 GO:0005515
Glsi08g0478 547 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Glsi08g0478 547 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Glsi08g0478 547 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Glsi08g0478 547 ProSitePatterns Trp-Asp (WD) repeats signature. 379 393 IPR019775 -
Glsi08g0478 547 Gene3D - 314 428 IPR015943 GO:0005515
Glsi08g0478 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 395 - -
Glsi08g0478 547 Pfam WD domain, G-beta repeat 357 392 IPR001680 GO:0005515
Glsi08g0478 547 Pfam WD domain, G-beta repeat 264 300 IPR001680 GO:0005515
Glsi08g0478 547 Pfam WD domain, G-beta repeat 208 245 IPR001680 GO:0005515
Glsi08g0478 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 309 IPR001680 GO:0005515
Glsi08g0478 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 246 IPR001680 GO:0005515
Glsi08g0478 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 246 - -
Glsi08g0478 547 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 101 409 IPR011047 -
Glsi08g0478 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Glsi08g0478 547 FunFam Protein ROOT INITIATION DEFECTIVE 3 95 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0478 Glsi-ChrGlsi08 3979992 3986796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0478 185 402 U-box Gene Family AT1G04510 22.072 1.46e-10 61.6