Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0475 ATGCAAGATCCACCTTCGAACCCTAATCCCAATCCCTCTCCTCACAATGCCGCTTCCAAATTCCCACCGCCATCACCCGCCGTTTCTACATCTCCGGCGACGGCGACGGCGACGGCTACTCCCACCGCCTCCTCATCGTCGTCTTCGTTGTTCATCCGGGGAGCTGGAAACGGTGGGGGAGGAGCTGCTGGTTCCGGCGTTGATGGATCCCACTCGCTGCATCCCCACCACCACAGGAGAGCCCACTCTGAGGTTTGCTTCCGGTTGCCCGACGACATGATGGATCTGTCGCCGTCCGATCCGTTCAATGGCGGGTCATCCACGGCTAGCCTTGAAGAGATCGGATCCGAGGACGACCTCTTTTCCACCTACATTGACGTTGAAAAGCTCGGAGGGGCTAACGGGTTGGGAAGTGGTGGGAATGGATCGGATCAGAATGGGAACGGGAATGGCGTTGGTGCTAGCAATCACAATGAAAACGAGAAGAGCTCGAGTGCGAGGCCAAGGCATAGGCATAGTAACTCCGTGGATGGGTCGACGTCTACAAGCATGTTTGGGGAGATTATGGAGGCAAAGAAAGCTATGCCTCCTGATAAGTTAGCCGAGCTCTGGACAATTGATCCCAAGCGTGCTAAGAGAATACTGGCGAATCGGCAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGTTATATACAAGAACTTGAGCGCAGAGTTCAGACACTTCAGACTGAAGCCACAACTCTTTCTGCCCAACTTACACTGTACCAGAGGGACACAACAGGTCTGAGCACTGAAAATACAGAGCTTAAGCTTCGTTTGCAAGCCATGGAGCAACAGGCACAGCTCCGAGATGCTCTCAATGAAGCATTGAAGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGGGAGATAATGAGCCCCTGTGAATCTTTTAATCTGGGAATGCACCAGATGCCATTTACTGCATCAAATTTCTTTCCTCTTCCACCGCAATCAGTTCCTTCTTCTGGTCACCAGAACATGCAGCTGCCATCATTCAATCACTCCCCGTCAAGTATGCCACCTCATCAAATGCAGCAAACAAATTCTCATCCATTCTCAGAAATATTGCAAAATGACCAACTTGGTCGTTTGCAGGGGCTTGACATTAGTAGCAAAGGATCATCCCTCGTGAAGTCTGAAGGCCCCTCACTTTCTGCAAGTGAGAGTAGCACAACATTTTAA 1227 0.511 MQDPPSNPNPNPSPHNAASKFPPPSPAVSTSPATATATATPTASSSSSSLFIRGAGNGGGGAAGSGVDGSHSLHPHHHRRAHSEVCFRLPDDMMDLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVEKLGGANGLGSGGNGSDQNGNGNGVGASNHNENEKSSSARPRHRHSNSVDGSTSTSMFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERRVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEIMSPCESFNLGMHQMPFTASNFFPLPPQSVPSSGHQNMQLPSFNHSPSSMPPHQMQQTNSHPFSEILQNDQLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0475 408 CDD bZIP_plant_RF2 210 259 IPR044759 GO:0003700|GO:0006355
Glsi08g0475 408 Coils Coil 225 252 - -
Glsi08g0475 408 Gene3D - 208 260 - -
Glsi08g0475 408 MobiDBLite consensus disorder prediction 387 408 - -
Glsi08g0475 408 SUPERFAMILY Leucine zipper domain 209 260 IPR046347 GO:0003700|GO:0006355
Glsi08g0475 408 Coils Coil 273 304 - -
Glsi08g0475 408 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 13 372 - -
Glsi08g0475 408 MobiDBLite consensus disorder prediction 1 29 - -
Glsi08g0475 408 MobiDBLite consensus disorder prediction 1 78 - -
Glsi08g0475 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 207 270 IPR004827 GO:0003700|GO:0006355
Glsi08g0475 408 MobiDBLite consensus disorder prediction 30 53 - -
Glsi08g0475 408 MobiDBLite consensus disorder prediction 330 364 - -
Glsi08g0475 408 SMART brlzneu 205 269 IPR004827 GO:0003700|GO:0006355
Glsi08g0475 408 FunFam probable transcription factor PosF21 208 261 - -
Glsi08g0475 408 Pfam bZIP transcription factor 209 264 IPR004827 GO:0003700|GO:0006355
Glsi08g0475 408 MobiDBLite consensus disorder prediction 138 161 - -
Glsi08g0475 408 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0475 Glsi-ChrGlsi08 3968078 3970835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0475 77 408 bZIP Transcription Factor Family AT2G40620 53.825 2.91e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi08g0475 bZIP_1 5.9e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0475 08 3968078 3970835 Glsi10g2883 10 54890039 54893865 CCT
Glsi08g0475 08 3968078 3970835 Glsi08g0475 08 3968078 3970835 ECH