Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0473 ATGGTAGTAGAGCCAATTACTCTTCCACCTTCGTCTCTCGGAACTGTGGCTTTTCCGAATGCCATGGACCCCGATGTTGCTCGTTGGGTATTGGAGTTCCTTCTTCGGAGTTCCGTTCCAGATTCAGTGCTCAAGAGAATCATCGTGGGTTTGCCGCTTACTGACGGCGATTCGCGGCTGAAGAAAACCATCCTTCTCAGGACCATTCAATCGCAATTGTCTGAAGCCTCATTTACAGAAACCCTATTGGAAACCCTAGAAATTATCGAAGCTTTAGATAGGACTCGTGGCATTGCAATCGGGGATACTATGAAACAGGCGTATTGCGCTGTTGCTGTGGAGTGCACTGTCAGGTACCTTGAGGCATCCTCGGATGACAACAAGAACGGTTTGTATTTCGACGCTGTCAAGAATATATGGAGGGGTCGTATTGGGGAAATGGAAGCGGCGGCGGCGTCAGGCGACGGGAGTGGGTTCTTTACGGATGAGTTAATTCATTGGAGGGATGAGATAGAGACTGCGCTTTGGGACTCGGAGGTGAGCGAGAGGTTAGCGAACATGAATACCAGACGAATTGCAGTAAACAAGGTTAGGGATTATCTAGCCGAAGCCTGGGAAGTCATGGGCCCTTCTTTTCTTGAGATAGTGGCTTCATTGCCCAAAGTGAAGGGTTCACAAAGTATAAGCGGGAATAATGTGAGTGGTGCTCGTGAGGAGGCTGCAACCGATAGGCCCGATAACGGTGGCGATAAAGGTGTTTGCGAGAATCCCTTGGCCGCTGAACCTATGAATATGTATGAAGGAAGGTTACTGAGTTCCACTAACCCGAGAGAGGTTTTAGTTGCTAGTGATAGGATTGATGATTCGGATTATGGTGCAATCTGCGCGGAGGAGGCACCAGTGACAGGTGGGAACCAGGACAGTGAACAATTGGAAAAGAGAGCTATGTCTTCGGTTGACGGAAATGGGGAATTGGGTGGGATTGACTCGCCTCCAAAGGGAGAGAGAGAAATTCTAAAGGGCAAGCTGCCGCTTAAACGTAAGCATATTGCGCCCTGTAGACCCTGTAGACGATATAGGGGAGTCAAAATTATTGATACTGACGAGGTGGACCCAGCAACACTGCATAGCAAATATGATCCTGTGCCTAGTGCTGAAGTTAAAAAAGTTCGAGAATCTCTTAAATCGAGTTCTTTGGAGTTACAAGCGTTGGTCAATGACCCTCTTCCTGATATTTTACATAAGTCAGACATTGTAAGATCCGAATTGGCAGTGAAAGGCAATAGTCATGAGCCACCTCTTGCAAACCAGAGCACAGATAGAGATGTACCAGATCCAAATGCTTGCAAGGGCATTGTGCTTTATCAACCTCTTGATTTTGATGCTATTTTTAAGAAAAAGTCTTCTGTTCAATGTAGTAATGTTCATCGCCCCAACTTAATGGAATGGAATAGTACTGCCCATACTTTTGAGTGGGATGATTCAATAAATAACTTGCCTGAGGTAATACTCAGAAAAAGGAGGAGAGCAAAAAGATGGAGTTCATTGGAAGAGGAGACCCTAAAGACTGGTGTAGAGAAGTTTGGTAAAGGAAACTGGAAGACAATCCTAAATTTTTACAGAGAGATATTTAGAAGGACAGAGAGAACTGAAGTTGATTTGAAGGACAAATGGAGAAACATGACGCGATATCCCACAGAGTAA 1704 0.456 MVVEPITLPPSSLGTVAFPNAMDPDVARWVLEFLLRSSVPDSVLKRIIVGLPLTDGDSRLKKTILLRTIQSQLSEASFTETLLETLEIIEALDRTRGIAIGDTMKQAYCAVAVECTVRYLEASSDDNKNGLYFDAVKNIWRGRIGEMEAAAASGDGSGFFTDELIHWRDEIETALWDSEVSERLANMNTRRIAVNKVRDYLAEAWEVMGPSFLEIVASLPKVKGSQSISGNNVSGAREEAATDRPDNGGDKGVCENPLAAEPMNMYEGRLLSSTNPREVLVASDRIDDSDYGAICAEEAPVTGGNQDSEQLEKRAMSSVDGNGELGGIDSPPKGEREILKGKLPLKRKHIAPCRPCRRYRGVKIIDTDEVDPATLHSKYDPVPSAEVKKVRESLKSSSLELQALVNDPLPDILHKSDIVRSELAVKGNSHEPPLANQSTDRDVPDPNACKGIVLYQPLDFDAIFKKKSSVQCSNVHRPNLMEWNSTAHTFEWDDSINNLPEVILRKRRRAKRWSSLEEETLKTGVEKFGKGNWKTILNFYREIFRRTERTEVDLKDKWRNMTRYPTE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0473 567 PANTHER MYB TRANSCRIPTION FACTOR 22 564 - -
Glsi08g0473 567 SMART sant 509 564 IPR001005 -
Glsi08g0473 567 Pfam Myb-like DNA-binding domain 511 561 IPR001005 -
Glsi08g0473 567 CDD SANT_TRF 511 563 - -
Glsi08g0473 567 MobiDBLite consensus disorder prediction 224 253 - -
Glsi08g0473 567 ProSiteProfiles Myb-like domain profile. 505 562 IPR001005 -
Glsi08g0473 567 SUPERFAMILY Homeodomain-like 512 564 IPR009057 -
Glsi08g0473 567 Gene3D - 513 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0473 Glsi-ChrGlsi08 3961137 3964306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0473 511 561 Single Myb Histone (SMH) Gene Family AT1G15720 50.980 9.25e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi08g0473 Myb_DNA-binding 2.3e-07 CL0123