Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0466 ATGAGTCCAAGGTTTGATCTTTACACAGGGATGGAATGTGCAAATGCTAAACCCATTAAACCCAACTCAAATATAACAGAAATCGTCTCCAAGTTCGCCAAAGTTTGTAAATTTAAATCCATTGGGGTTTTTTCTTCTGAAATCCCCAATCTCCATCACCTGCAAAGACCCATTTACAATGATGCTCCTGTGAGTGAAAACAGCAGGGATGCAAGTCAGCAGACCAAGAACTATGGCGAGAAAATCCATCCTAACCCCATTGAAGTGCCAACGAAAGAGGGTACTTGTGGGGTTAGTTTGGAGATCATGAAAATATTTGATACTGTTTCAGCGCTGAAATTAGCATATCTTCAGCTTCAGCAAGCTCACATCCCTTATGAGCCACAGAAGGTTATTGCTGCTGATGACCTAGTAGTTGCTGAGCTTGGGAAGCTCTGCAAGTTCAAGCGAAATTACAAGGAGAAGCAATACAAGAAAGCACAGTTCAATGCTGCACGTTCTGATCTCTTGCAGGCTGAAATGGAGGCCAAAGAGGCATTGTTAGGGAAGCTAAAGTCTCAAAACAGTGCTAAAGACTCTGAGATTCTTCGTTTGAGGCAACAGCTCAAGGATTTGGAGATGATTAATAAAACAATAGCAGAGAAGATCAAGCAGCTGAGTTTGGAGAAGAGGAAAGCAAGTGTTTTGACTGTTACAAAGTTCCAAGATGTCTTCAAGGCTGCTTCGAAGTCCATTCATGATTTTGCAAAACCTTTGATTAGTTTGATGAAAGCTTCAGGCTGGGACCTAGATGCGGTAGCAAAGTCGATAGAAAATGAAGCTATTTATACCAAAAGATCCGACAAGAAATATGCTTTCGAGGCCTACATTGCACGCAGGATGTTTCACGGGATTTGTCTGACTTCCTATAATGTGGGTGATATTATGAAGTTCGAAGACCCAATTGATGCACTAATAGAGAGCCCAGATTCAGAGTTTGCCAAATTCTGTCGAACAAAATATCTTCTAGTGGTTCATCCGACAGTGGAAGAGACATTCTTTGGGAACTTGGATCACCGGACACTAATATTGAGTGGGAAACATCCTAGGACAGAGTTCTATCAACTATTTGCCAAGATGGCAAAATGGGTTTGGGTTTTACAAGGATCTGCGATATCACTAGATCCAGATGCAACCTTATATTCTGTGAATAGAGATAGCACGTTCTCCAGGTTGTATATGGAATCTGTCGAGGGCGAAAGGGAGAGTGCAGTTGTATCTGATGAAGAACGAGCCTCCTACAAAGTTCAGTTCATGGTGATGCCTGGGTTTAGAATTGGACAGACATTGGTGAAGTCTCGAGTTTATGTCTCAGCTTCCCAAGTGTTGAATGGAGACTCTTTTAACTGGTTCCGATTGTCAGATATGATACCCAATGCTTGGTTTTACAAGCTCAAAGACATGAGCAGATCGAGGAAGCGAAATGGTTCTCATGCTATGAACAACAAAGTAAGCTCACCAGCAGTATCCCGGAGGTTGCAGCCAAACTGTTCGCACTACTTCCCCACCGAACCGTGCAGAGCTGGCAAGCTATACAACTCACCAATTCAAACAAAATTCACAGAATTCCCATTTGCTGATTCACCGAGAAGGTCATCCAAGAGAAGAGCCAGGAGAAAAACCATTTACAAGCCTTCTCCTTCAGTTGTCTCCTCTGTCTCAGCCAGTTGCAGCTGTCATTGGGATAAGCCAAATCAAATTCAGTCTCCGGATTACTATGCCTCTTCCATTGAGAGTTCTTCTGAGTCGGACCTCCATGAATATGCTTCATCTGAGTCTGACTGTGATAGCTTTGCTGCCCCTGACTTGTTCGGCCTGTCCTCTGATTGCAGTTGCAGAGTTAGCTCTTCTACCAATGATATCATCATCGACATGAACAACGAATCATTCACTGGGAACTCTGAAAAGCTAGATGGATTTGATGCAGTTTCACAGTTGGGTCTTGCTCCAATACTGACAAAGCCAGTGAAGTTTGATAATAAGGTCATTGGAGCAATGGGGTTGAGATGTTCATCTAAATTGGATGAGCGATCTATACCAGTCAAAATTAGCAAGGAGGAAAGCAGTGTAATTCAGAGAGAGCGAAAATTCAGTACTGTAGGTCGAAAGTCCTCTGCTAATTCTACGGGTATTAGACTTAGGGTCAATTCTCCCAAACTTGCAAGCAGGAAAGTTCAAGCCTATGCAAGAAGGAGTGTATCATCCAGTCCATGCAAGGTTTCAAGGAATGGAGGGTTTCCAGAGGGTTTTGCAGTTGTCAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGAGTCAATGGTAGAGATGATCATAGAGAACAATATCTGGGCATCAAAGGATTTGGAGGATCTGCTTGCCTGTTATCTTTCACTGAACTCAAGTGAATATCATGAACTCATTGTCAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACTCAGAATTGTTCGCAGTCTAAGATTTGGACCCCAAATTATATACGATGTCCTGAAGATGCATTTTACAAATGCTAGATTGCACTCACAAGCATTTTCAATTTGTTATAACACAGTATCATCATCATCATGA 2613 0.4237 MSPRFDLYTGMECANAKPIKPNSNITEIVSKFAKVCKFKSIGVFSSEIPNLHHLQRPIYNDAPVSENSRDASQQTKNYGEKIHPNPIEVPTKEGTCGVSLEIMKIFDTVSALKLAYLQLQQAHIPYEPQKVIAADDLVVAELGKLCKFKRNYKEKQYKKAQFNAARSDLLQAEMEAKEALLGKLKSQNSAKDSEILRLRQQLKDLEMINKTIAEKIKQLSLEKRKASVLTVTKFQDVFKAASKSIHDFAKPLISLMKASGWDLDAVAKSIENEAIYTKRSDKKYAFEAYIARRMFHGICLTSYNVGDIMKFEDPIDALIESPDSEFAKFCRTKYLLVVHPTVEETFFGNLDHRTLILSGKHPRTEFYQLFAKMAKWVWVLQGSAISLDPDATLYSVNRDSTFSRLYMESVEGERESAVVSDEERASYKVQFMVMPGFRIGQTLVKSRVYVSASQVLNGDSFNWFRLSDMIPNAWFYKLKDMSRSRKRNGSHAMNNKVSSPAVSRRLQPNCSHYFPTEPCRAGKLYNSPIQTKFTEFPFADSPRRSSKRRARRKTIYKPSPSVVSSVSASCSCHWDKPNQIQSPDYYASSIESSSESDLHEYASSESDCDSFAAPDLFGLSSDCSCRVSSSTNDIIIDMNNESFTGNSEKLDGFDAVSQLGLAPILTKPVKFDNKVIGAMGLRCSSKLDERSIPVKISKEESSVIQRERKFSTVGRKSSANSTGIRLRVNSPKLASRKVQAYARRSVSSSPCKVSRNGGFPEGFAVVKSSLDPQRDFRESMVEMIIENNIWASKDLEDLLACYLSLNSSEYHELIVKAFEQIWFDMAQLRIVRSLRFGPQIIYDVLKMHFTNARLHSQAFSICYNTVSSSS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0466 870 Coils Coil 195 222 - -
Glsi08g0466 870 ProSiteProfiles OVATE domain profile. 765 824 IPR006458 -
Glsi08g0466 870 Pfam Plant protein of unknown function (DUF641) 102 214 IPR006943 -
Glsi08g0466 870 NCBIfam uncharacterized plant-specific domain TIGR01568 763 825 IPR006458 -
Glsi08g0466 870 Pfam DNA-binding domain 464 499 IPR025830 GO:0003677
Glsi08g0466 870 MobiDBLite consensus disorder prediction 539 558 - -
Glsi08g0466 870 Pfam Transcriptional repressor, ovate 769 825 IPR006458 -
Glsi08g0466 870 Coils Coil 167 187 - -
Glsi08g0466 870 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 26 451 IPR040225 GO:0009639|GO:0009959
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0466 Glsi-ChrGlsi08 3880775 3885840 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Glsi08g0466 DUF641 4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0466 08 3880775 3885840 Glsi10g2879 10 54746866 54748017 CCT
Glsi08g0466 08 3880775 3885840 Glsi08g0466 08 3880775 3885840 ECH