Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0463 ATGCCAGAGATTGAACATGTGCCGGTGAACAACGCCTTGTTCGGCAAATATGAGCTGGGAAGGCTTCTGGGTTGTGGTGCCTTCGCCAAGGTCTATTACGCCCGAAATGTTCAAAACGGCCAAAGCGTCGCCGTTAAAGTCATCAACAAGAAGAAGATCTCTGGCACCGGCCTCATGTCCAATATCAAGCGTGAGATTTCCATCATGAGTCGCCTCAATCACCCCAACATCGTCAAGCTTCACGAGGTCTTAGCCACCAAGACCAAGATCTATTTTGTCATGGAGTTCGTCAAGGGCGGCGAATTGTTCGCTAAAATCTCAAAGGGACGGTTCGGCGAGGATCTCAGCCGCAAGTATTTTCAGCAGTTAATCTCCGCCGTCGGGTACTGCCACTCCCGCGGGGTGTTCCACCGTGACTTGAAACCGGAGAATCTCTTGGTCGACGAAAATGGGAAGTTGAAGGTTTCAGATTTCGGACTCAGTGCCGTGACGGACCAGATCCGAACCGACGGCTTGCTCCATACACTTTGCGGCACGCCGGCTTACGTGGCACCGGAGATATTGACCAAGAAAGGTTACGATGGGGCGAAGGTGGATGTGTGGTCATGTGGCGTCATCCTCTTCGTGTTAACCGCTGGGTACCTACCGTTCAACGACCCGAACCTCATGGTCATGTACAAGAAGATTTACAACGGCGAATTCCGGTGCCCCAGGTGGATGTCGTCGGACCTCAAGCGGTTCCTGTCACGCCTCCTGGACACCAACCCCGAAACCCGAATCACCGTCGACGAGATCCTCCGGGACCCATGGTTCAGGAAAGGGTACAAGGAGGTCAAATTTCACGAGGAGCACTTAGATTCCGGGTCAGGGGCGAAGTTCGACGAGGCGGGGAAGATGACCGATCTGAATGCCTTTGATATTATCTCGTTCTCACCCGGTTTGGACCTCTCCGGTTTGTTCGATGCCTCAAACAACGCGGCCGAGGATGGGGAGAGGTTCGTGACGCCGGGGTCGCCGGAAAAGATAATAGAGAAAGTGGAGGAGATCGCCAGGGCGGAGAGGCTCGTGGTGAGGAAGAAGAAGGAATGTGGGATTGTGCTGGATGGGCAGAATGGTAATTTCGGGATTGCAGTCGAGGCTTACCGGTTAACGGAGGGCCTGGTTGTGGTGGAGGCCAAGAGAAGAGGCAGAGACGCCGTAGGTTTCAAGGATATGTGGAAGAACAAGCTGAAGCCTCAGCTCAGTGCCTCCGGTCCTGAAACTGATTCACAGGTTACCGGTGACTAG 1287 0.5392 MPEIEHVPVNNALFGKYELGRLLGCGAFAKVYYARNVQNGQSVAVKVINKKKISGTGLMSNIKREISIMSRLNHPNIVKLHEVLATKTKIYFVMEFVKGGELFAKISKGRFGEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLVDENGKLKVSDFGLSAVTDQIRTDGLLHTLCGTPAYVAPEILTKKGYDGAKVDVWSCGVILFVLTAGYLPFNDPNLMVMYKKIYNGEFRCPRWMSSDLKRFLSRLLDTNPETRITVDEILRDPWFRKGYKEVKFHEEHLDSGSGAKFDEAGKMTDLNAFDIISFSPGLDLSGLFDASNNAAEDGERFVTPGSPEKIIEKVEEIARAERLVVRKKKECGIVLDGQNGNFGIAVEAYRLTEGLVVVEAKRRGRDAVGFKDMWKNKLKPQLSASGPETDSQVTGD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0463 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Glsi08g0463 428 Pfam NAF domain 301 359 IPR004041 GO:0007165
Glsi08g0463 428 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0463 428 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Glsi08g0463 428 CDD CIPK_C 303 414 - -
Glsi08g0463 428 FunFam Non-specific serine/threonine protein kinase 8 298 - -
Glsi08g0463 428 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0463 428 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Glsi08g0463 428 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Glsi08g0463 428 SUPERFAMILY Protein kinase-like (PK-like) 14 281 IPR011009 -
Glsi08g0463 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 395 - -
Glsi08g0463 428 Gene3D Kinase associated domain 1, KA1 303 417 - -
Glsi08g0463 428 Gene3D Transferase(Phosphotransferase) domain 1 9 302 - -
Glsi08g0463 428 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0463 Glsi-ChrGlsi08 3857257 3858543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0463 1 423 CBL-interacting serine-threonine protein kinases AT2G30360 67.361 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi08g0463 Pkinase 6e-74 CL0016