Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0458 ATGGAGAATAAATCGAATGTCTTAATGCAAAGATACGAGTTAGGAAGATTGCTAGGCCAAGGTACATTTGCAAAGGTGTACTATGCACGGAATGCTGTGACTAACCAGAGTGTGGCTATAAAAGTGATTGACAAAGATAAGGTTTTGAAATCTGGGGAAGCTGATCGGGTCAAACGCGAAATATCTGTTATGAGATTGGTTAGACATCCCAATATTATACATCTCTTTGAGGTTATGGCCACCAAGAGTAAGATTTACTTCGTTATGGAATATGCTAAAGGTGGTGAACTCTTTGACAAGGTGGCAAAAGGGAAGCTCAAAGAAGATGCTGCACATAAGTATTTTCGGCAGCTAATCAATGCAGTTGATTTTTGTCACAGCAGAGGTGTGTACCACCGAGATATAAAGCCAGAGAACCTTTTGTTGGATGAAAATAGGAATCTTAAGGTGTCTGATTTTGGGTTAAGTGCTATGGCTGAATCCAAGAGGCAGGATGGCTTACTGCATACTACTTGTGGCACACCTGCCTATGTTGCTCCCGAAGTCATCAAAAGGAAAGGGTATGATGGTGTCAGAGCTGATGTTTGGTCTTGTGGAGTAGTCCTGTTTGTCTTATTAGCAGGTTATCTCCCTTTTCATGATTCAAACTTGATGGAGATGTATAGGAAGATTGGCAAAGCAGAATTTAAATGCCCTGATTGGTTCTCACCAGAAGCACGCAGACTAGTATGCAAGATATTGGATCCAGATCCTGATACTAGGATTTCCATAGCTATGATTAAGGAATGTTCTTGGTTCAAGACAGGACCAAATGCTAGGCATAAAAAACCTAAAGTGGAAAAAAAGACTGTTTCATTGTCAGATAACAACCCTTATGATCAAAGCAATGAAACTGATAGTGACAGTATAGCTGCAGAAGCAAGGGAAGAGTCATTTGTGCCCACCAGTTTAAATGCATTTGATATTATCTCCCTTTCGGCTGGTTTTAATCTTTCTGGATTTTTCAGTGACAGTTTTCAGAAGAGAGAAGCAAGATTTGCTTCAAGAAAACCTGCATCGGTAATCATCTCTAAGCTGGAAGAAACTGCTAATCATCTAAAGCTGAAAATAAAGAAGAAAGCGGCGGGTTTGTTACAATTAGAGGGCTTCAAGGAAGGTAGGAAGGGCAATTTATCCATTGATGCAGAGATCTTCGAGGTTACTCCATATTTCCATTTGGTGGAGGTGAAAAAATCAGATGGAGATACATTGGAATTTCACAAGATATTGAGAGAGGATATAAGGCCTGCACTTCAGGATATTGTCTGGGTTTGGCAAGGTGATGACCCACAACAGCAATCACAGCCGTCAGAACAACAACTGCAGATACATGACCAGCAGCCACAACAACCACAAATATAA 1401 0.4054 MENKSNVLMQRYELGRLLGQGTFAKVYYARNAVTNQSVAIKVIDKDKVLKSGEADRVKREISVMRLVRHPNIIHLFEVMATKSKIYFVMEYAKGGELFDKVAKGKLKEDAAHKYFRQLINAVDFCHSRGVYHRDIKPENLLLDENRNLKVSDFGLSAMAESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGVRADVWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGKAEFKCPDWFSPEARRLVCKILDPDPDTRISIAMIKECSWFKTGPNARHKKPKVEKKTVSLSDNNPYDQSNETDSDSIAAEAREESFVPTSLNAFDIISLSAGFNLSGFFSDSFQKREARFASRKPASVIISKLEETANHLKLKIKKKAAGLLQLEGFKEGRKGNLSIDAEIFEVTPYFHLVEVKKSDGDTLEFHKILREDIRPALQDIVWVWQGDDPQQQSQPSEQQLQIHDQQPQQPQI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0458 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Glsi08g0458 466 Gene3D Kinase associated domain 1, KA1 317 437 - -
Glsi08g0458 466 CDD STKc_SnRK3 11 265 - -
Glsi08g0458 466 SUPERFAMILY Protein kinase-like (PK-like) 8 320 IPR011009 -
Glsi08g0458 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Glsi08g0458 466 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0458 466 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Glsi08g0458 466 CDD CIPK_C 318 432 - -
Glsi08g0458 466 FunFam Non-specific serine/threonine protein kinase 2 296 - -
Glsi08g0458 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 431 - -
Glsi08g0458 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0458 466 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Glsi08g0458 466 FunFam Non-specific serine/threonine protein kinase 313 436 - -
Glsi08g0458 466 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Glsi08g0458 466 MobiDBLite consensus disorder prediction 284 301 - -
Glsi08g0458 466 Pfam NAF domain 314 372 IPR004041 GO:0007165
Glsi08g0458 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0458 466 MobiDBLite consensus disorder prediction 271 301 - -
Glsi08g0458 466 MobiDBLite consensus disorder prediction 442 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0458 Glsi-ChrGlsi08 3839422 3840822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0458 1 447 CBL-interacting serine-threonine protein kinases AT5G58380 67.834 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi08g0458 Pkinase 3.7e-75 CL0016