Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0454 ATGGGCAAATATAATTCGGGAAATAGAAGTGGTGCTGCTTATTGTCCAATTTTGCTCGTTGCTGATATGTTGATGCACTTATTTTATTGGGACCTATCTTCTTCCTTTTCTTTCATATCTACATGCAAGTTTTCTGTTACTGATGCAGGTGTTATGGAGATATCCTTCTTAAAGATGCTAGTTAATGGCATATCTTCATTTTTGCATTTATCATTTTCTGGAAACTTAAACTCAGAACTTGTCTCAAAGTATTACCAAAAGGCAGAGGAGACACTTAAGTTGTTGAAGCCGATAGTTGATGCTGTTGTTAATTCTGAATTAGCATCTGATGAAGTGCTCAGTAGGACATTTGAAGAAGTGGGTCAGGCTGTTGATGAGTTGAGGGGGCTTTTTGGGAACTGGCACCTATTATCTAGCAAAGTTTACTTTGTTATGCAAGTTGAATCCTTAATATCTAGGATTCAGACGTCAGGACTCAATATCTTCCAGCAGCTGAAGGCTTCTCATCAATGTCTTCCCGATGAACTGAGTTCTGTACATGTTGAGAACTTTGCTCAGAAACTTAAGCTTTTGGGACATGAGGAAACATCGTCAGTCATTAAAGAAGCTATTAGTGAGCAGGTGGAAGGTGTTGGACCTAGTTCAGAGGTCCTGGCAAACATTGCTGAGAGCCTGGGCCTGAGGTCTAACCAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAGCTGAAAACAATGCAGAAGCTGAATATATTGATCAAATGATTACTCTTGTAACTCGCATGCATGAGCGTCTTGTAATGCTTAAGCAAGCCCAGAGCTGTAGCCCAGTTCCAGTACCTGCTGATTTTTGCTGTCCTCTTTCTTTGGAATTGATGACAGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGCGGGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTCTGTCCAAAAACACGTCAGACTCTGGCTCACACAAACTTAATACCTAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCGGTTGATACCACACTGTCCACAAACTTAAATCAATCATCTTTTCTTCATGGATATAAGGACTCTGGAGCAGTCAGGGAATCGCCTGTTTTTGCGCATTCCAGGGATAAACAGCCATCATCACCTGAGACAGCTCGCTCTCATTCTTTCAGTTCACCAGGTAAGAGCTTAACTTCTTCTGGAGGAATCCACAGAGAGGGAACATCACCATTTCATCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGTCATGGCTAATGGGCAGTGTTTGGATATTGCAAGAATATCACCAACAGGTTCTGATGACAGGTCTGCTAGCTCAGATGAAAGGAGTGATGATTCAGTTGGACAACCCTCAATGTCTCAATCTATAACTGAATCTTCCAATGCCTTTAGCTCTGAACTATCTCAAACGCATGTAACAACTGCATCTGATTCCAGTGCACTTACTAGTGCTCAAGGAACACAAGGTGATAGTAACAGTGCTTCTCAGCCGCCAACCAATCCAGGCAACAATAGGGACACTTCTGTGGAGGTAAATTCAGGGCCAGATGCTAATGGTGCTGCTGCCATCAGCGCTCCACAGAGAGAACCTGAGTTCTCCCCACGATTGATGGAGACAAGGTCTCGAAACCAGAGTATATGGCGGCGGCCATCGGAGAGATTTGTTCCTAGGGTGGTTTCTTCTGCTGTTGAAACAAGAGCTGATCTTTCTGGTATTGAAACCCAGGTTCGGAATTTGGTTGAGGACTTGAAGAGCTCTTCTCTTGATACTCAAAGAGAGGCAACAGCAAAACTCCGCCTTCTTGCTAAGCACAACATGGATAATCGACTTGTGATTGCAAACTGTGGAGCCATTAACATATTAGTTGACTTACTCCAATCAACTGATACAATGATCCAGGAAAATTCTGTTACAGCACTCCTCAACTTATCAATCAATGATAACAACAAATCTGCAATTGCAAGTGCTGGTGCAATTGATCCTCTGATTCATGTCCTTGAGACAGGGAGCCCTGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCGGTGATTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTAGGCCACTGGTTGATTTACTGGGGAATGGAACTCCAAGAGGGAAGAAAGATGCTGCCACTGCTTTATTTAATTTGTCAATATTTCATGAAAACAAGGGTCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAATTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATTCCAGAGGGAAGAGCTGCAATTGGTCAGGAAGGTGGGATTCCTGTACTTGTTGAGGTCGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCCGCTGCTCTTCTACATCTGTGCTTACACAGTAATAGATTTTTAAGCACGGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCGGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTGCTTAACCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGAGGCTGA 2664 0.4366 MGKYNSGNRSGAAYCPILLVADMLMHLFYWDLSSSFSFISTCKFSVTDAGVMEISFLKMLVNGISSFLHLSFSGNLNSELVSKYYQKAEETLKLLKPIVDAVVNSELASDEVLSRTFEEVGQAVDELRGLFGNWHLLSSKVYFVMQVESLISRIQTSGLNIFQQLKASHQCLPDELSSVHVENFAQKLKLLGHEETSSVIKEAISEQVEGVGPSSEVLANIAESLGLRSNQEILIEAVALEKLKENAEQAENNAEAEYIDQMITLVTRMHERLVMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDTTLSTNLNQSSFLHGYKDSGAVRESPVFAHSRDKQPSSPETARSHSFSSPGKSLTSSGGIHREGTSPFHPRSTSEGSLSVMANGQCLDIARISPTGSDDRSASSDERSDDSVGQPSMSQSITESSNAFSSELSQTHVTTASDSSALTSAQGTQGDSNSASQPPTNPGNNRDTSVEVNSGPDANGAAAISAPQREPEFSPRLMETRSRNQSIWRRPSERFVPRVVSSAVETRADLSGIETQVRNLVEDLKSSSLDTQREATAKLRLLAKHNMDNRLVIANCGAINILVDLLQSTDTMIQENSVTALLNLSINDNNKSAIASAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0454 887 Coils Coil 230 260 - -
Glsi08g0454 887 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Glsi08g0454 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 767 808 IPR000225 GO:0005515
Glsi08g0454 887 SUPERFAMILY RING/U-box 279 362 - -
Glsi08g0454 887 CDD RING-Ubox_PUB 288 340 IPR045210 -
Glsi08g0454 887 Gene3D - 583 882 IPR011989 -
Glsi08g0454 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Glsi08g0454 887 SUPERFAMILY ARM repeat 604 876 IPR016024 -
Glsi08g0454 887 PANTHER U BOX DOMAIN-CONTAINING 82 876 - -
Glsi08g0454 887 Pfam Armadillo/beta-catenin-like repeat 674 713 IPR000225 GO:0005515
Glsi08g0454 887 Pfam Armadillo/beta-catenin-like repeat 717 754 IPR000225 GO:0005515
Glsi08g0454 887 Pfam Armadillo/beta-catenin-like repeat 635 672 IPR000225 GO:0005515
Glsi08g0454 887 SMART arm_5 633 673 IPR000225 GO:0005515
Glsi08g0454 887 SMART arm_5 674 714 IPR000225 GO:0005515
Glsi08g0454 887 SMART arm_5 796 836 IPR000225 GO:0005515
Glsi08g0454 887 SMART arm_5 756 795 IPR000225 GO:0005515
Glsi08g0454 887 SMART arm_5 715 755 IPR000225 GO:0005515
Glsi08g0454 887 FunFam RING-type E3 ubiquitin transferase 588 882 - -
Glsi08g0454 887 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Glsi08g0454 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 644 686 IPR000225 GO:0005515
Glsi08g0454 887 FunFam RING-type E3 ubiquitin transferase 286 361 - -
Glsi08g0454 887 MobiDBLite consensus disorder prediction 454 572 - -
Glsi08g0454 887 MobiDBLite consensus disorder prediction 471 542 - -
Glsi08g0454 887 MobiDBLite consensus disorder prediction 394 440 - -
Glsi08g0454 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 768 IPR000225 GO:0005515
Glsi08g0454 887 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Glsi08g0454 887 MobiDBLite consensus disorder prediction 391 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0454 Glsi-ChrGlsi08 3795379 3799971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0454 247 887 U-box Gene Family AT2G23140 63.748 0.0 744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0454 08 3795379 3799971 Glsi10g2868 10 54207256 54225494 CCT