Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0436 ATGCTTTCAGGGGACATACCTCCTAATCAGACTATATACGTTAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAGTTAAAGAGATCACTGTATTGCTTATTCTCACAATATGGAAGGATTTTGGACGTTGTTGCTCTAAAGACACCCAAGCTTAGAGGACAAGCTTGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAATGCTGTGCGACAAATGCAGAACTTCCCATTTTACGAAAAACCAATGCGAATTCAATATGCTAAAACAAAGTCAGATTGTATTGCTAAAGAAGAAGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAAAAAGCTGAAAGAAAACGACGTACTGAAGAATCACAGCAATCTGCTGTGCCTAATGGTACACATGGTGCAAGTAATGGTGGCCCAACGGCTACATTCCGCCAAGGGCCAGGTGCCCAAGAAGCTGCTGCTCCAAATAATATATTGTTTATAGAGAATTTGCCCCATGAAACCACCAGTAGGATGCTTGAAATGCTCTTCCAACAATACCCGGGTTTTAAGGAAGTGCGTCTGATTGAAGCAAAGCCAGGCATTGCGTTTGTAGACTTTGAAGATGAAGTACAGTCCTCCATGGCCATGCAGGCTCTTCAGGGCTTCAAAATCACCCCTCAGAATCCCATGCTTATAACTTTTGCTAAAAAGTAG 699 0.4177 MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRTEESQQSAVPNGTHGASNGGPTATFRQGPGAQEAAAPNNILFIENLPHETTSRMLEMLFQQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMLITFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0436 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Glsi08g0436 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Glsi08g0436 232 MobiDBLite consensus disorder prediction 124 144 - -
Glsi08g0436 232 CDD RRM1_U1A_like 11 88 - -
Glsi08g0436 232 Coils Coil 104 124 - -
Glsi08g0436 232 Gene3D - 4 117 IPR012677 -
Glsi08g0436 232 Gene3D - 149 232 IPR012677 -
Glsi08g0436 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Glsi08g0436 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Glsi08g0436 232 CDD RRM2_U1A_like 156 228 - -
Glsi08g0436 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Glsi08g0436 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Glsi08g0436 232 MobiDBLite consensus disorder prediction 98 150 - -
Glsi08g0436 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Glsi08g0436 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Glsi08g0436 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Glsi08g0436 232 MobiDBLite consensus disorder prediction 98 123 - -
Glsi08g0436 232 SUPERFAMILY RNA-binding domain, RBD 8 219 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0436 Glsi-ChrGlsi08 3655957 3659357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0436 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.458 3.68e-09 54.7