Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0399 ATGGGATACAGTTCATTGCTTAGAACCCCAAAGAAAGAGGAGCAACAGGTACCAGATTCTGTCTTCCCCACATTACCCGATTCCAGCAAAGGTTATTCCAATGAAGATTTCGATGTTTTGGATGAATTGAACGGCATTTTGGGCATTGAAGACGACGAAAAATTACCACCACGGAAAATTTATAGTGGTCAGCTTAACTGGGATTTCATGGAATGGGAGGGATTCTCCGTCATTAACAGAGAGGGAGCAGAAGATGACAAAGAAAAAAAGCAGTTAATGAAGAAGAAGCTCGCAACCGAGAACAGAAGCCAGTGCCTCGTGGGTGAGCAGATGATAAAGAGAGAAGTTATTGGGTTTTGGGAGGAGGACGATAAGCAGAAGATGGTGTCTTTGAATTTGAACTTGAATTATCAAGATGTTCTGGACGCATGGTCTGACCGTGGTTCTCTCTGGGCTGACGATTATTCTCTGTCGATGGCCACCAACAATGGCTACTATATGGGAGAAGTTCCAATATTGGAGGAAGAAAGAACAAGAAGGGAAGCAAGTGTTCTAAGGTACAAAGAGAAGCGCCAAAGCAGATTGTTCTCTAAGAAGATAAGATACCAAGTTCGAAAAATAAATGCCGATAGAAGACCCAGAATCAAGGGTCGCTTTGTGAAGAGACTTTAA 672 0.4271 MGYSSLLRTPKKEEQQVPDSVFPTLPDSSKGYSNEDFDVLDELNGILGIEDDEKLPPRKIYSGQLNWDFMEWEGFSVINREGAEDDKEKKQLMKKKLATENRSQCLVGEQMIKREVIGFWEEDDKQKMVSLNLNLNYQDVLDAWSDRGSLWADDYSLSMATNNGYYMGEVPILEEERTRREASVLRYKEKRQSRLFSKKIRYQVRKINADRRPRIKGRFVKRL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0399 223 Coils Coil 80 100 - -
Glsi08g0399 223 ProSiteProfiles CCT domain profile. 180 222 IPR010402 GO:0005515
Glsi08g0399 223 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 28 222 - -
Glsi08g0399 223 MobiDBLite consensus disorder prediction 1 33 - -
Glsi08g0399 223 Pfam CCT motif 180 222 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0399 Glsi-ChrGlsi08 3427345 3428445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0399 123 222 C2C2-CO-like Transcription Factor Family AT1G73870 46.218 1.48e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi08g0399 CCT 4.9e-18 CL0281