Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0397 ATGGGGAGTTCTTCACCTTGTGCCTCCTGCAAGTTGTTACGACGCCGTTGCTCCAAAGACTGCATCTTTGTTCCTTACTTTCCTTCTGATAACCTTTATAAGTTTGCCATGGTGCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGAGTCTTCCGGTTCATCAAAGAGCAGATGCTGTAAACAGTTTAGTTTACGAGGCAAATGCGAGAATGAGAGACCCAGTGTATGGATGTGTTGGAGCCATATCTCACCTACAAAGCCAAGTCTCACAATTGGAAATGCAACTTGCAGAGGCTCAAGCACAGATTGTTTGCATCCAGAATAGGCAAGTGCCAACACACCAAGATGACCAATATTCCCTTCTCCTATCTGATAATAATCCCTACGAAAGCATTCCCCTTCCTCCTTCTTCTTCCTCATTTGGCGGCGATGTACCTCAAAGCCCTCTTGACTCTTTTTGGACTTCATTCGCTAATCCTCAGTGA 495 0.4505 MGSSSPCASCKLLRRRCSKDCIFVPYFPSDNLYKFAMVHKVFGASNVSKMLQSLPVHQRADAVNSLVYEANARMRDPVYGCVGAISHLQSQVSQLEMQLAEAQAQIVCIQNRQVPTHQDDQYSLLLSDNNPYESIPLPPSSSSFGGDVPQSPLDSFWTSFANPQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0397 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 119 - -
Glsi08g0397 164 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Glsi08g0397 164 Coils Coil 85 112 - -
Glsi08g0397 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0397 Glsi-ChrGlsi08 3415017 3415920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0397 3 130 AS2 family AT2G30130 75.000 7.26e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi08g0397 LOB 2.5e-41 No_clan