Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0392 ATGGACAAAGTCGAATCGCTTCAGAAAAGTCTCAACATCATAAATGGGTTCCTCCAAGACACCGAGGGGAATCGAAACAACCATGAAGTTAAAGCTGTGATCAACCAAATCAGAGATGACGTCAACGAAGCCCAGGATGTTATTGATAACTACATTGCCTACAAAGTCCAGCAGAGTCGAAGAACCCTCCTAGGCAAGGCTTTTCATAGCATGGACTACGGAAAAATGCTTCACGATAAGATTGATAAGCTAAATTTCAATATAAAGGAAATACCCATAGAGGTTTTGCTTAGCCTTCTAAGGGGTATGAAGTCCATACCCGAAGATAAGATCAACCGCAATAATGACAAGGACGAGCAAAGTGAAGAAGAAGTCGTTGGAGTACTGAAGGCTAGAGGGAAGAAGAAGCACTTGAAGAGGCTCAATGCGCCGAAGCACTGGATGCTTGACAAGCTTGGAGGTGCTTTCGCTCCCAAGCCATCTCCTGGACCTCACAAGTTAAGGGAGTGTCTGCCACTTATCCTTATCCTGCGGAACAAGCTGAAACATGCACTTTCATACCGTGAGGTCATTTCAATTCTCATGCAGCGACATGTTTTGGTTGATGGAAAAGTTAGAACTGATCAGAAGTACCCAGCAGGATTCATGGATGTTGCATCCATTCCAAAAACAAACGATAACTTCAGACTGCTCTATGATGCCAAGGGTCGTTTTCGCCTAAGAACCATAACGGAGGATGAGGCGAAGTTCAAGCTCTGTAAGGTAAGATCAGTGCAGTTTGGGAAAAGAGGAATTCCCTATCTGAACACATACGATGGACGAACCATCCGATATCCTGACCCACTTATCAGAGCCAATGATACCATCAGGCTGGACCTAGAGACCTACAAGATCACAGGGTTCATAAAGTTTGAGGTTGGAAACGTTGCAATGGTGACCGGTGGAAGAAACAGGGGACGAGTTGGAATCATAAAGAGGAGGGAAAAACATATGGGCACCTTCGACACCATCCATGTCGAAGATGCAGTTGGGAACGAGTTTGCAACTCGTCTGGAAAACGTTTTTATAATTGGGCAGGGCTCAAAACCATGGGTCTCTCTGCCCAAAGGAAAGGGTATTAAGCTTAGTATTATTGAAGAAGCAAGGTTGAGACGTGAGGCACAAAGGGCTTCCTCAGCATGA 1182 0.4501 MDKVESLQKSLNIINGFLQDTEGNRNNHEVKAVINQIRDDVNEAQDVIDNYIAYKVQQSRRTLLGKAFHSMDYGKMLHDKIDKLNFNIKEIPIEVLLSLLRGMKSIPEDKINRNNDKDEQSEEEVVGVLKARGKKKHLKRLNAPKHWMLDKLGGAFAPKPSPGPHKLRECLPLILILRNKLKHALSYREVISILMQRHVLVDGKVRTDQKYPAGFMDVASIPKTNDNFRLLYDAKGRFRLRTITEDEAKFKLCKVRSVQFGKRGIPYLNTYDGRTIRYPDPLIRANDTIRLDLETYKITGFIKFEVGNVAMVTGGRNRGRVGIIKRREKHMGTFDTIHVEDAVGNEFATRLENVFIIGQGSKPWVSLPKGKGIKLSIIEEARLRREAQRASSA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0392 393 Pfam Rx N-terminal domain 2 60 IPR041118 -
Glsi08g0392 393 Pfam S4 domain 176 218 IPR002942 GO:0003723
Glsi08g0392 393 CDD S4 180 241 - -
Glsi08g0392 393 Pfam RS4NT (NUC023) domain 132 168 IPR013843 -
Glsi08g0392 393 CDD KOW_RPS4 304 358 IPR041982 -
Glsi08g0392 393 Gene3D - 304 374 IPR014722 -
Glsi08g0392 393 FunFam 40S ribosomal protein S4 304 374 - -
Glsi08g0392 393 Gene3D - 130 246 IPR036986 GO:0003723
Glsi08g0392 393 FunFam 40S ribosomal protein S4 130 246 - -
Glsi08g0392 393 Pfam 40S ribosomal protein S4 C-terminus 341 387 IPR032277 -
Glsi08g0392 393 Hamap 30S ribosomal protein S4e [rps4e]. 136 367 IPR000876 GO:0003735|GO:0005840|GO:0006412
Glsi08g0392 393 SMART kow_9 303 330 IPR005824 -
Glsi08g0392 393 Gene3D - 251 301 IPR038237 -
Glsi08g0392 393 Gene3D - 1 86 - -
Glsi08g0392 393 FunFam 40S ribosomal protein S4 251 301 - -
Glsi08g0392 393 ProSitePatterns Ribosomal protein S4e signature. 137 151 IPR018199 -
Glsi08g0392 393 Pfam Ribosomal family S4e 224 298 IPR013845 -
Glsi08g0392 393 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 131 382 IPR000876 GO:0003735|GO:0005840|GO:0006412
Glsi08g0392 393 Pfam KOW motif 306 340 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0392 Glsi-ChrGlsi08 3374760 3379960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0392 131 391 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 79.310 6.52e-160 448