Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0369 ATGAACCCATTGACTCAAATGGTTCAGAGCATATTTTCCGACAACAGCAACATCATGCTTGCAGCTATCATTTCTCTGCTTCTAGTCATCCTCTTCGTCCTTCTCCTTCATGTCTACGCCAAATGGTTCTTGGCTCAGGCCCAAGCACAATCGCAAGCTCGGCGCCGCCGTCGCCGGCGAGCCTCAGTCACCGTCTCCGACGTTCTTGGGCCTGCTCGGTTCCACCACTTCCACAACTTCAACTTACAAGATTCCCCCATTTCGAATTCCCCAACCAAAGGGCTCGATTCGGCTATCATTGCTGCCATCCCTGTGTTCATATATGAAGCAGCAGCAGAAGCAGAGGAAGGAGATAAGCAGAGCAAGCACGACCAAGAATTGGAATGCGTGATTTGCTTGAGCACTTTTAGGGATGGTGAAATCGGAAGGAGCTTACCTAAGTGTGGCCATGCGTTTCATGTGGAATGCATTGACATGTGGTTGAATTCGCATTCCAGTTGCCCAATTTGCCGAGCTCCAATCGTGGGTACGATTTTTGACCATGATTCTCAATTGGGTTCTGTTAATGGGGATGATTCCTCAGCTGTACTTGAGATTGTGATTGATACTCCAAGTTCTGAGATTAGGGAGAATGAGCGTGGAAATGAGAGTAGTAATAATGACAATGTTGGGGTGAGTGATTCTATATCAGAAACTTCATCCTCCTTGTTGGGGTGTTCTTTGAAGAGGATGCTGAGCAAGGTTTTTCCATCTTCTAATGTTAATGAACTAGATTCTTGA 780 0.4654 MNPLTQMVQSIFSDNSNIMLAAIISLLLVILFVLLLHVYAKWFLAQAQAQSQARRRRRRRASVTVSDVLGPARFHHFHNFNLQDSPISNSPTKGLDSAIIAAIPVFIYEAAAEAEEGDKQSKHDQELECVICLSTFRDGEIGRSLPKCGHAFHVECIDMWLNSHSSCPICRAPIVGTIFDHDSQLGSVNGDDSSAVLEIVIDTPSSEIRENERGNESSNNDNVGVSDSISETSSSLLGCSLKRMLSKVFPSSNVNELDS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0369 259 CDD RING-H2_EL5-like 128 171 - -
Glsi08g0369 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 175 IPR013083 -
Glsi08g0369 259 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 175 IPR044675 -
Glsi08g0369 259 SMART ring_2 129 170 IPR001841 -
Glsi08g0369 259 SMART FANCL_C_2 125 178 - -
Glsi08g0369 259 Pfam Ring finger domain 128 171 IPR001841 -
Glsi08g0369 259 MobiDBLite consensus disorder prediction 206 230 - -
Glsi08g0369 259 FunFam RING-H2 finger protein ATL1 83 176 - -
Glsi08g0369 259 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Glsi08g0369 259 SUPERFAMILY RING/U-box 121 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0369 Glsi-ChrGlsi08 3217927 3218706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0369 12 172 Rapid Response to Elicitors AT3G16720 36.025 8.70e-30 112