Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0362 ATGGCTTCGTGGGTTAGAGGCAAGTGTATTGGTAAGGGGGCGTTTGGCACCGTCAGTGTTGGAGTTGCCAAATCGGACGGTCGGGTATTTGCGGTCAAGTCCGTGGATCTTAAGACGGGGTTACCAGCTCAGGTTGAGGCTTTGGAGAATGAGATTCGGATTCTCCGGGGTTTGTCGTCGCCTTACGTGGTGGGGTTCATCGGCGACGATGTCACGTGCGAGGGTGCCGCCGCCGCCACCTCCAACCGGAATTTGCACTTGGAGTACTTGCCCGGTGGCAACCTTGCTGACTTGGCGTCTCGGAATCGCGGGAAGGACGCTGACGTGGACGAGCGGTTAGTGAGGTACTACACCTGGTGCTTGGTGAATGCGTTGAGGCACGTCCACTCGAGGGGCGTCGTGCACTGCGACGTGAAAGGGAGGAATGTTCTGGTGGGGCCCAATGGCTGCGTCGCCAAGCTGGCTGATTTCGGTTCGGCGATGGATTTCTCCGGCGAAGGGTCTGCGGTGGGGATTCTACCGCGTGGGAGCCCGTTGTGGATGGCTCCGGAGGTGATTCGGAGGGAGTCTCAGGGGCCAGAGTCTGATGTGTGGTCCTTGGGATGCACGGTGATCGAGCTGGTCAACGGGAAGCCAGCATGGGAGGACCACGGCGCTGACACGCTGAGTCGAATCGGGTTCTCTGGTGACTTACCCGAGTTTCCATCTCAATTGTCGGAACTCGGCAGGGATTTCCTTGAGAAGTGTCTGAGGAGGGAACCGAAGGAGCGGTGGAGCTGTGATCAACTGCTGCAGCACCCGTTTTTGTCCTCCGTATCACCCAATAAGCTCGTGGACTCGTCTCCTCGGTGCGTTCTCGACTGGGTTAACTCAGAGTTTGTCGAGGAAGACGAAGAAGAAGTAATCAGATTCGATGCTCGATGTTCGGCGAAGGAAAGAATTGATAAATTAGCTACAACGTTGAGGGCAAATTGGGAAACAGAGGGGTGGGTGGCGGTGAGGGAATTAGCATCCAACACAGAGCCAACAAAAAGCGAAGCAGGGGATGGTGGTAGTGGGAGGGGGGGCGAAGAAGAAGGGATCGGTTCGGAATATCCGGATTGGACGAGGGTGGAAGAGGGAATGAAAGTAGGGACTAGTCGGGAATATTCGGTAGGTAAAAGCAGATCAAAAACTGAAAGGGTAAATCCGGAAAATGAGGAATTGGGTGGGAGGAGGTGGTTGGTGTGGCGGTGTGATCACAGGGAGTGCAACGGGACTGGGAGTATAGCTGGTTGGAGCTGTCGGTATGGGACAGAGAAGGGAGATTTAGTTGTGCGGATGAAAAGAATAATAAGCATTTACAGCTTGTATTGTAAATTATTAAAAGCATCACATTGTTTAAATTTATTTCCAATATATTTAAATATATTATTTTTTCTGATTATTTATATTCCATACTTTTCATGGACATGTGCCAAAAATCATGTTCTTTTGTTTCAGGGACATTAA 1491 0.5198 MASWVRGKCIGKGAFGTVSVGVAKSDGRVFAVKSVDLKTGLPAQVEALENEIRILRGLSSPYVVGFIGDDVTCEGAAAATSNRNLHLEYLPGGNLADLASRNRGKDADVDERLVRYYTWCLVNALRHVHSRGVVHCDVKGRNVLVGPNGCVAKLADFGSAMDFSGEGSAVGILPRGSPLWMAPEVIRRESQGPESDVWSLGCTVIELVNGKPAWEDHGADTLSRIGFSGDLPEFPSQLSELGRDFLEKCLRREPKERWSCDQLLQHPFLSSVSPNKLVDSSPRCVLDWVNSEFVEEDEEEVIRFDARCSAKERIDKLATTLRANWETEGWVAVRELASNTEPTKSEAGDGGSGRGGEEEGIGSEYPDWTRVEEGMKVGTSREYSVGKSRSKTERVNPENEELGGRRWLVWRCDHRECNGTGSIAGWSCRYGTEKGDLVVRMKRIISIYSLYCKLLKASHCLNLFPIYLNILFFLIIYIPYFSWTCAKNHVLLFQGH 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0362 496 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 342 - -
Glsi08g0362 496 ProSiteProfiles Protein kinase domain profile. 4 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0362 496 Pfam Protein kinase domain 6 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0362 496 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Glsi08g0362 496 CDD STKc_MAPKKK 3 269 - -
Glsi08g0362 496 SUPERFAMILY Protein kinase-like (PK-like) 4 294 IPR011009 -
Glsi08g0362 496 MobiDBLite consensus disorder prediction 336 365 - -
Glsi08g0362 496 Gene3D Transferase(Phosphotransferase) domain 1 2 336 - -
Glsi08g0362 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Glsi08g0362 496 FunFam Serine threonine protein kinase putative 2 318 - -
Glsi08g0362 496 SMART serkin_6 4 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0362 Glsi-ChrGlsi08 3160256 3161746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0362 4 344 MAP Kinase Kinase Kinase AT2G30040 60.933 1.29e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi08g0362 Pkinase 6e-53 CL0016